CX300550

Overview
NameCX300550
Unique NameCX300550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.806e-43
Identity = 81/147 (55.10%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 438
            E+TFIM+KPDGVQR L+G+++ R E+KG  L G KLM V    AEKHY +   KPFFG L+E+ITSGPV AM+WEGE V++  R +IG TNP ++ PGTIRGD  +  G+NIIHGSDS+ESA++EI ++F +   +++Q  +  WIY
Sbjct:    3 EKTFIMVKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGENVIEVTRQLIGKTNPKEALPGTIRGDYGMFVGKNIIHGSDSLESAEREINIFFKNEELVSYQQLMAGWIY 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_YEAST (Nucleoside diphosphate kinase OS=Saccharomyces cerevisiae GN=YNK1 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.359e-43
Identity = 80/148 (54.05%), Postives = 109/148 (73.65%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 441
            E+TFI +KPDGVQRGLV +++ R EKKG+ L  +KL+  D    E+HY +   KPFF  ++ ++ SGP++A +WEG+ VV+ GRTI+GATNP  SAPGTIRGD  I  GRN+ HGSDSV+SA++EI LWF  +  ++W+S+   WIYE
Sbjct:    6 ERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 153          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_STACT (Nucleoside diphosphate kinase OS=Staphylococcus carnosus (strain TM300) GN=ndk PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.359e-43
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 441
            E+TF+MIKPDGVQR LVGE+I RLEKKG  L G K MTV +  AE HY + + KPF+  L+ +ITS PV AM+ EGE VV+  R +IG TNP ++APGTIRGDL +  GRN+IHGSDSVESA++EI+LWF    ++ + ++   W+YE
Sbjct:    2 ERTFLMIKPDGVQRKLVGEIITRLEKKGLKLVGGKFMTVSKEKAETHYGEHADKPFYEGLVSFITSAPVFAMVVEGENVVEVTRNMIGKTNPTEAAPGTIRGDLGLTVGRNVIHGSDSVESAKREISLWFEPNELSVYTANDEEWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.081e-43
Identity = 78/147 (53.06%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 438
            E+TF+M+KPDGVQR  +GE++ R EKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:    2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_BACCZ (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ZK / E33L) GN=ndk PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.081e-43
Identity = 78/147 (53.06%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 438
            E+TF+M+KPDGVQR  +GE++ R EKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:    2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_BACAN (Nucleoside diphosphate kinase OS=Bacillus anthracis GN=ndk PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.081e-43
Identity = 78/147 (53.06%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 438
            E+TF+M+KPDGVQR  +GE++ R EKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:    2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_ASHGO (Nucleoside diphosphate kinase OS=Ashbya gossypii GN=NDK1 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.081e-43
Identity = 81/148 (54.73%), Postives = 109/148 (73.65%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 441
            E+TFI IKPDGVQRGL+ +++ R E +G+ L G+KL+T      ++HY +   KPFF  ++ Y+TSGP++A +WEG+ VVK GR I+GATNP  SAPGTIRGD A+  GRN+ HGSDSVESAQ+EI LWF  +  ++W+ +   WIYE
Sbjct:    4 ERTFIAIKPDGVQRGLISKILSRFESRGYKLVGIKLVTPTENLLKQHYAEHVEKPFFPKMLAYMTSGPILATVWEGKDVVKQGRVILGATNPLNSAPGTIRGDFALDMGRNVCHGSDSVESAQREIDLWFKKEELVDWKLNQLSWIYE 151          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.963e-43
Identity = 79/147 (53.74%), Postives = 106/147 (72.11%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIY 438
            E+TF+M+KPDGVQR L+GE++ R E KG+ L G KLM V    AE HY +   +PFFG L+++ITSGPV AM+WEGE V+ T R ++G TNP ++ P TIRGD  I  G+NIIHGSDS ESA++EI L+F +  I +++   + WIY
Sbjct:    2 EKTFLMVKPDGVQRELIGEIVKRFETKGYKLAGAKLMQVSNQLAETHYSEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGKTNPLEADPSTIRGDFGISVGKNIIHGSDSAESAEREITLFFTENEIVSYEKQANNWIY 148          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.963e-43
Identity = 79/146 (54.11%), Postives = 108/146 (73.97%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWI 435
            E+T++MIKPDGVQR L+GE++ R EKKGF+L G KLMTV +  AE HY +   +PFFG L+++ITSGPV AM+WEGE V+ T R ++GATNPA + PGTIRGD  +    N+IHGSDS ESA++EI ++F    +N +   ++ W+
Sbjct:    2 ERTYLMIKPDGVQRNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIRGDFGVQVAMNVIHGSDSPESAKREIDIFFDSSELNEYDKVVNRWV 147          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.171e-42
Identity = 79/148 (53.38%), Postives = 114/148 (77.03%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 441
            E+T++M+KPDGVQRGL+G++I + E+KG+ + GLK+M + R  AE+HY + + KPFF  L+++ITSGPVVAM+ EG+ VV T R ++GATNP ++APGTIR    +  GRNIIHGSDS+ESAQ+EI ++F  +  I++  ++  WIYE
Sbjct:    2 ERTYLMVKPDGVQRGLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLVDFITSGPVVAMVIEGKDVVTTAREMMGATNPLKAAPGTIRATFGVDVGRNIIHGSDSLESAQREIGIFFKSEELIDYDRAIDTWIYE 149          
The following BLAST results are available for this feature:
BLAST of CX300550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BACSU1.806e-4355.10Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]
NDK_YEAST2.359e-4354.05Nucleoside diphosphate kinase OS=Saccharomyces cer... [more]
NDK_STACT2.359e-4357.43Nucleoside diphosphate kinase OS=Staphylococcus ca... [more]
NDK_BACHK3.081e-4353.06Nucleoside diphosphate kinase OS=Bacillus thuringi... [more]
NDK_BACCZ3.081e-4353.06Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACAN3.081e-4353.06Nucleoside diphosphate kinase OS=Bacillus anthraci... [more]
NDK_ASHGO3.081e-4354.73Nucleoside diphosphate kinase OS=Ashbya gossypii G... [more]
NDK_OCEIH8.963e-4353.74Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDK_BACHD8.963e-4354.11Nucleoside diphosphate kinase OS=Bacillus halodura... [more]
NDK_DESRM1.171e-4253.38Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]

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Properties
Property NameValue
Genbank descriptionC07011E11SK SaltLeaf1 Citrus clementina cDNA clone C07011E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300550 ID=CX300550; Name=CX300550; organism=Citrus clementina; type=EST; length=631bp
GAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGT
TGGTGAACTCATCATCAGACTTGAGAAGAAGGGTTTCTCTTTGAAGGGTT
TGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGAT
TTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGG
TCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCC
GCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATC
CGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGA
CTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCC
CTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAAT
GTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCC
TATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGA
AGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATT
CTTGTGGTTGCCATATACAATATTTAAGCTT
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