CX300593

Overview
NameCX300593
Unique NameCX300593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300593 vs. ExPASy Swiss-Prot
Match: CYNS_ECOLU (Cyanate hydratase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 43/125 (34.40%), Postives = 64/125 (51.20%), Query Frame = 3
Query:   18 SFNQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELPDELIHEMMRPPIRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 392
            SF +IA+ TGL   +V   L  Q  L  + A ++ A L    D ++   M P     D  +  +PT+YR  E +  +G ++K +++E+FGDGI+SAI+F                 IT DGKYLP
Sbjct:   28 SFAEIADGTGLAEAFVTAALLGQQALPADAARQVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX300593 vs. ExPASy Swiss-Prot
Match: CYNS_ECOLI (Cyanate hydratase OS=Escherichia coli (strain K12) GN=cynS PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 3
Query:   18 SFNQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELPDELIHEMMRPPIRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 392
            SF +IA+ TGL   +V   L  Q  L P  A +L  A  +L ++ I  +   P+R   D  +  +PT+YR  E +  +G ++K +++E+FGDGI+SAI+F                 IT DGKYLP
Sbjct:   28 SFAEIADGTGLAEAFVTAALLGQQAL-PADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX300593 vs. ExPASy Swiss-Prot
Match: CYNS_ECODH (Cyanate hydratase OS=Escherichia coli (strain K12 / DH10B) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 3
Query:   18 SFNQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELPDELIHEMMRPPIRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 392
            SF +IA+ TGL   +V   L  Q  L P  A +L  A  +L ++ I  +   P+R   D  +  +PT+YR  E +  +G ++K +++E+FGDGI+SAI+F                 IT DGKYLP
Sbjct:   28 SFAEIADGTGLAEAFVTAALLGQQAL-PADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX300593 vs. ExPASy Swiss-Prot
Match: CYNS_ECO5E (Cyanate hydratase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 43/125 (34.40%), Postives = 64/125 (51.20%), Query Frame = 3
Query:   18 SFNQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELPDELIHEMMRPPIRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 392
            SF +IA+ TGL   +V   L  Q  L  + A ++ A L    D ++   M P     D  +  +PT+YR  E +  +G ++K +++E+FGDGI+SAI+F                 IT DGKYLP
Sbjct:   28 SFAEIADGTGLAEAFVTAALLGQQALPADAARQVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX300593 vs. ExPASy Swiss-Prot
Match: CYNS_ECO57 (Cyanate hydratase OS=Escherichia coli O157:H7 GN=cynS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 43/125 (34.40%), Postives = 64/125 (51.20%), Query Frame = 3
Query:   18 SFNQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELPDELIHEMMRPPIRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 392
            SF +IA+ TGL   +V   L  Q  L  + A ++ A L    D ++   M P     D  +  +PT+YR  E +  +G ++K +++E+FGDGI+SAI+F                 IT DGKYLP
Sbjct:   28 SFAEIADGTGLAEAFVTAALLGQQALPADAARQVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX300593 vs. ExPASy Swiss-Prot
Match: CYNS_BURCH (Cyanate hydratase OS=Burkholderia cenocepacia (strain HI2424) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 3
Query:   18 SFNQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELPDELIHEMMRPPIR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 392
            SF Q+ E TGL+  +V   L  Q  L P  A ++ A    L D+ +  +   P+R S D  +  +PT+YR  E +  +G ++K +++E+FGDGI+SAI+F                 IT DGKYLP
Sbjct:   28 SFAQLTEGTGLSEAFVTAALLGQHAL-PADAARVVADKLGLDDDAVLLLQMIPLRGSIDDRVPTDPTIYRFYEMLQVYGTTLKALVHEKFGDGIISAINFRLDVKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX300593 vs. ExPASy Swiss-Prot
Match: CYNS_BURCC (Cyanate hydratase OS=Burkholderia cenocepacia (strain MC0-3) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 3
Query:   18 SFNQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELPDELIHEMMRPPIR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 392
            SF Q+ E TGL+  +V   L  Q  L P  A ++ A    L D+ +  +   P+R S D  +  +PT+YR  E +  +G ++K +++E+FGDGI+SAI+F                 IT DGKYLP
Sbjct:   28 SFAQLTEGTGLSEAFVTAALLGQHAL-PADAARVVADKLGLDDDAVLLLQMIPLRGSIDDRVPTDPTIYRFYEMLQVYGTTLKALVHEKFGDGIISAINFRLDVKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX300593 vs. ExPASy Swiss-Prot
Match: CYNS_BURCA (Cyanate hydratase OS=Burkholderia cenocepacia (strain AU 1054) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 3
Query:   18 SFNQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELPDELIHEMMRPPIR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 392
            SF Q+ E TGL+  +V   L  Q  L P  A ++ A    L D+ +  +   P+R S D  +  +PT+YR  E +  +G ++K +++E+FGDGI+SAI+F                 IT DGKYLP
Sbjct:   28 SFAQLTEGTGLSEAFVTAALLGQHAL-PADAARVVADKLGLDDDAVLLLQMIPLRGSIDDRVPTDPTIYRFYEMLQVYGTTLKALVHEKFGDGIISAINFRLDVKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX300593 vs. ExPASy Swiss-Prot
Match: CYNS_ANAVT (Cyanate hydratase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 47/133 (35.34%), Postives = 65/133 (48.87%), Query Frame = 3
Query:    3 RESGKSFNQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELPDELIHEMMRPPIRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSE 401
            ++ G SF  +    G   V++A L  RQA    E A  L  AL   P  + H +   PI+   P +  +P +YR  E +  +G  IK++I E+FGDGIMSAIDF                 IT  GK+LPY +
Sbjct:   15 KDQGLSFADLEAILGRNEVWIAALFYRQASASEEEAKLLVEALGLDPSYIQH-LTEYPIKGLGPIVPTDPLIYRFYEIMQVYGFPIKQVIQEKFGDGIMSAIDFTLD-VEKEADPKGDRVKITMSGKFLPYKK 145          
BLAST of CX300593 vs. ExPASy Swiss-Prot
Match: CYNS_PSEPW (Cyanate hydratase OS=Pseudomonas putida (strain W619) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 3
Query:   18 SFNQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELPDELIHEMMRPPIR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 392
            SF QI + TGL+  +V   L  Q  L PE+A K+     +L  + +  +   P+R S+   +  +PT+YR  E +  +G ++K +++E+FGDGI+SAI+F                 IT DGKYLP
Sbjct:   28 SFAQIVDGTGLSEAFVTAALLGQHPL-PESAAKVVGDKLDLDADQVALLQSMPVRGSFFDGVPSDPTIYRFYEMMSVYGTTLKALVHEKFGDGIISAINFKLDIKKVEDPDGGHRAVITLDGKYLP 152          
The following BLAST results are available for this feature:
BLAST of CX300593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CYNS_ECOLU1.169e-1234.40Cyanate hydratase OS=Escherichia coli O17:K52:H18 ... [more]
CYNS_ECOLI1.169e-1235.71Cyanate hydratase OS=Escherichia coli (strain K12)... [more]
CYNS_ECODH1.169e-1235.71Cyanate hydratase OS=Escherichia coli (strain K12 ... [more]
CYNS_ECO5E1.169e-1234.40Cyanate hydratase OS=Escherichia coli O157:H7 (str... [more]
CYNS_ECO571.169e-1234.40Cyanate hydratase OS=Escherichia coli O157:H7 GN=c... [more]
CYNS_BURCH1.169e-1235.71Cyanate hydratase OS=Burkholderia cenocepacia (str... [more]
CYNS_BURCC1.169e-1235.71Cyanate hydratase OS=Burkholderia cenocepacia (str... [more]
CYNS_BURCA1.169e-1235.71Cyanate hydratase OS=Burkholderia cenocepacia (str... [more]
CYNS_ANAVT1.169e-1235.34Cyanate hydratase OS=Anabaena variabilis (strain A... [more]
CYNS_PSEPW1.526e-1234.92Cyanate hydratase OS=Pseudomonas putida (strain W6... [more]

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Properties
Property NameValue
Genbank descriptionC07012A09SK SaltLeaf1 Citrus clementina cDNA clone C07012A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300593 ID=CX300593; Name=CX300593; organism=Citrus clementina; type=EST; length=699bp
GGCGAGAATCCGGTAAGTCATTTAATCAGATTGCAGAAGAGACAGGGCTG
ACAAACGTCTACGTTGCGCAGCTACTCAAACGCCAAGCGCAGCTCAAGCC
CGAAACTGCCCCCAAGCTACGGGCAGCCCTGCCCGAGCTGCCCGATGAGC
TTATTCACGAGATGATGAGACCGCCAATAAGATCGTATGACCCGAACTTG
ATCCAGGAACCCACCGTTTATAGGTTAAACGAAGCGGTTATGCATTTTGG
TGAGAGTATTAAGGAAATTATCAATGAGGAGTTTGGTGATGGCATCATGT
CGGCTATAGACTTCTACTGCTCTGTTGACAAAGTTAAAGGTGTGGATGGG
AAAGATCGTGTGGTCATTACTTTTGATGGAAAATATTTACCTTATAGTGA
GCAGAAGTCGGAGCACATGGTTTCAAGACTACAACAGCAGTGAAGTTAAT
CCATTTCCTACCTGGTGCAGATTCTATACACGCATAATACTTATTGTACG
AGTGAACTCCCTGGAGCTACCATAGTTGGATGCTTCATGGCCTGTGCTTT
GTAATGTAAAGATAATTGTTTGTGCAAGTGCGCGCGCAGGGTCTTGTGTG
ATATTCCCAGCATTAAATGCCATATTCGGGAAGAGCTACTATTGCCATCC
GCATATGGCCTATCTGTGTTATTGTTTTTGACCATTTTCACATCTGAAT
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