CX300596

Overview
NameCX300596
Unique NameCX300596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T +GL+AG+FTK  D A T++ AL+AGTVW NCY V  A +PFGG+K+SG GRE G Y L
Sbjct:  419 TTYGLSAGIFTKDLDKAVTVSSALQAGTVWVNCYSVVSAQVPFGGFKMSGNGRELGEYGL 478          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.835e-15
Identity = 35/61 (57.38%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            + +GLAAG++T++   A+ +   L+AGTVW NCY+VFDAA PFGGYK SG+GRE G Y+L+
Sbjct:  421 SEYGLAAGLWTENVKQAHYIADRLQAGTVWVNCYNVFDAASPFGGYKQSGLGREMGSYALD 481          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.337e-14
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T +GLAA VFTK  D A T   AL+AGTVW NCY  F A  PFGG+K+SG GRE G Y L
Sbjct:  432 TTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGL 491          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.889e-14
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            T +GL+AGVFTK  D A T++ AL+AGTVW NCY V  A  PFGG+K+SG GRE G Y  +
Sbjct:  424 TFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFH 484          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.131e-13
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T +GLAAGVFTK  D A T++ AL+AG VW NCY +  A  PFGG+K+SG GRE G + L
Sbjct:  424 TTYGLAAGVFTKDLDRAITVSSALQAGVVWVNCYMILSAQCPFGGFKMSGNGRELGEHGL 483          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH2_MACPR (Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.478e-13
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            T +GLAAGVFTK  D A T++ AL+AGTVW NCY       PFGG+K+SG GRE G Y L+
Sbjct:  163 TFYGLAAGVFTKDLDKAVTVSAALQAGTVWVNCYMANSVQCPFGGFKMSGNGRELGEYGLH 223          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.930e-13
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNALL 195
            T +GLAA VFTK+ DTA  +  +L AGTVW N Y+ F    PFGGYK+SG GRE G Y L A L
Sbjct:  421 TSYGLAAAVFTKNIDTALKVANSLEAGTVWVNTYNHFAFQAPFGGYKMSGQGREFGHYGLEAFL 484          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.930e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            T +GL+AGVFT   D A T++ AL+AGTVW NCY V  A  PFGG+K+SG GRE G Y  +
Sbjct:  424 TFYGLSAGVFTNDIDKAVTISSALQAGTVWVNCYGVVTAQCPFGGFKMSGNGRELGEYGFH 484          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.930e-13
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            T +GL AG FTK  D A T++ AL+AGTVW NCY V  A  PFGG+K+SG GRE G Y  +
Sbjct:  423 TTYGLFAGSFTKDLDKAITVSAALQAGTVWVNCYGVVSAQCPFGGFKMSGNGREMGEYGFH 483          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            T +GL+AG+FT   D A T++ AL++GTVW NCY V  A  PFGG+K+SG GRE G Y  +
Sbjct:  424 TFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFH 484          
The following BLAST results are available for this feature:
BLAST of CX300596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
AL1A1_RABIT3.517e-1560.00Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ALDH4_BACSU7.835e-1557.38Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
AL1A1_CHICK1.337e-1461.67Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_HUMAN3.889e-1459.02Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A1_RAT1.131e-1358.33Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
ALDH2_MACPR1.478e-1359.02Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=... [more]
ALDH_ENCBU1.930e-1357.81Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
AL1A1_MACFA1.930e-1357.38Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_HORSE1.930e-1357.38Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_SHEEP3.292e-1354.10Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]

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Properties
Property NameValue
Genbank descriptionC07012A12SK SaltLeaf1 Citrus clementina cDNA clone C07012A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300596 ID=CX300596; Name=CX300596; organism=Citrus clementina; type=EST; length=492bp
AAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAAGAGTGCAGACAC
TGCTAACACCATGACGCGTGCACTGAGAGCTGGGACTGTATGGACTAACT
GCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGGTACAAGCTGAGT
GGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGCTTTACTTTGCAA
GTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGCTCTAGTTTCC
TGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAGGACAGCGTGC
AAATATCAGCTTGTAATTATGGAGCAAATGGATAATCTTACTTTTAAAAG
AACTTTACTTTTCTTTTTGTGCTGTAAGCACAATGATGCATGTCTGTTGA
TCAAGGCAGCTTTCACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAACCTCGAGGGGGGGCCCGGT
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