CX300596

Overview
NameCX300596
Unique NameCX300596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            T +GL+AG+FT   D A T++ AL++GTVW NCY V  A  PFGG+K+SG GRE G Y  +
Sbjct:  424 TFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFH 484          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH_ASPNG (Aldehyde dehydrogenase OS=Aspergillus niger GN=aldA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T +GLAAG+ TK   TA  ++ ALRAGTVW N Y++    +PFGG+K SGIGRE G Y+L
Sbjct:  420 TSYGLAAGIHTKDVTTAIRVSNALRAGTVWVNSYNLIQYQVPFGGFKESGIGRELGSYAL 479          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T +GL A VFTK+ D A  +  AL +GTVW NCY+ F A  PFGG+K+SG GRE G Y+L
Sbjct:  435 TDYGLTAAVFTKNLDKALKLASALESGTVWVNCYNAFYAQAPFGGFKMSGNGRELGEYAL 494          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T +GLAAG+FTK  D A T++ AL+AG VW NCY +  A  PFGG+K+SG GRE G + L
Sbjct:  424 TTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMMLSAQCPFGGFKMSGNGRELGEHGL 483          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKG 171
            T +GLAAGVFTK  D A T++ AL+AGTVW NCY       PFGG+K+SG GRE G
Sbjct:  424 TPYGLAAGVFTKDLDRAITVSSALQAGTVWVNCYLTLSVQCPFGGFKMSGNGREMG 479          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T +GL A VFTK+ D A  +  AL +GTVW NCY+ F A  PFGG+K+SG GRE G Y+L
Sbjct:  435 TDYGLTAAVFTKNLDKALKLAAALESGTVWINCYNAFYAQAPFGGFKMSGNGRELGEYAL 494          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: YF19_SCHPO (Putative aldehyde dehydrogenase-like protein C9E9.09c OS=Schizosaccharomyces pombe GN=SPAC9E9.09c PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.634e-12
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   10 FGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            +GLAAGV T +   A  ++ AL AGTVW NCY++    IPFGGYK SGIGRE G Y L
Sbjct:  427 YGLAAGVHTNNITNAIKVSNALEAGTVWVNCYNLLHHQIPFGGYKESGIGRELGSYGL 484          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.634e-12
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            T +GL AGVFTK  D A T++ AL+AGTVW NCY    A  P GG+K+SG GRE G Y ++
Sbjct:  424 TYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIH 484          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.634e-12
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            T +GL AGVFTK  D A T++ AL+AGTVW NCY    A  P GG+K+SG GRE G Y ++
Sbjct:  424 TYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIH 484          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T +GLAAGVFTK  D A T++ AL+AG VW NCY       PFGG+K+SG GRE G + L
Sbjct:  424 TTYGLAAGVFTKDLDKAITVSSALQAGMVWVNCYLAVPVQCPFGGFKMSGNGRELGEHGL 483          
The following BLAST results are available for this feature:
BLAST of CX300596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
AL1A1_BOVIN3.292e-1354.10Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
ALDH_ASPNG4.299e-1356.67Aldehyde dehydrogenase OS=Aspergillus niger GN=ald... [more]
AL1A3_RAT4.299e-1356.67Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
AL1A1_MOUSE4.299e-1356.67Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL1A7_RAT5.615e-1360.71Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
AL1A3_MOUSE5.615e-1356.67Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
YF19_SCHPO1.634e-1258.62Putative aldehyde dehydrogenase-like protein C9E9.... [more]
ALDH1_MACPR1.634e-1255.74Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
ALDH1_ELEED1.634e-1255.74Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
AL1A7_MOUSE2.134e-1256.67Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC07012A12SK SaltLeaf1 Citrus clementina cDNA clone C07012A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300596 ID=CX300596; Name=CX300596; organism=Citrus clementina; type=EST; length=492bp
AAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAAGAGTGCAGACAC
TGCTAACACCATGACGCGTGCACTGAGAGCTGGGACTGTATGGACTAACT
GCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGGTACAAGCTGAGT
GGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGCTTTACTTTGCAA
GTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGCTCTAGTTTCC
TGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAGGACAGCGTGC
AAATATCAGCTTGTAATTATGGAGCAAATGGATAATCTTACTTTTAAAAG
AACTTTACTTTTCTTTTTGTGCTGTAAGCACAATGATGCATGTCTGTTGA
TCAAGGCAGCTTTCACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAACCTCGAGGGGGGGCCCGGT
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