CX300596

Overview
NameCX300596
Unique NameCX300596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNALL 195
            T++GLAAG+ ++  D  NT++R+++AG +W NCY  FD   P+GGYK+SG  RE G+ +L+  L
Sbjct:  423 TKYGLAAGILSQDIDLINTVSRSIKAGIIWVNCYFGFDLDCPYGGYKMSGNCRESGMDALDNYL 486          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T +GL A VFTK+ D A  +  AL +GTVW NCY+   A  PFGG+K+SG GRE G Y+L
Sbjct:  435 TDYGLTAAVFTKNLDKALKLASALESGTVWINCYNALYAQAPFGGFKMSGNGRELGEYAL 494          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH_AGABI (Aldehyde dehydrogenase OS=Agaricus bisporus GN=aldA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            + +GLAA VF++  + A     A +AGT W NC +  DA +PFGGYK SGIGRE G Y+L+
Sbjct:  424 SNYGLAAAVFSQDINKAIETAHAFKAGTAWVNCANTIDAGVPFGGYKQSGIGRELGEYALH 484          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:   10 FGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            FGL A VFT   + A T++ A++AGTVW NCY+  +A  PFGG+K+SG GRE G + L
Sbjct:  443 FGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGL 500          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            TR+GLAA VFT+  D A   T+AL+AGTVW N Y++     PFGG+K SG GRE G   L A
Sbjct:  440 TRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKA 501          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            TR+GLAA VFT+  D A   T+AL+AGTVW N Y++     PFGG+K SG GRE G   L A
Sbjct:  440 TRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKA 501          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH_EMENI (Aldehyde dehydrogenase OS=Emericella nidulans GN=aldA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T +GLAA V TK+ +TA  ++ AL+AGTVW N Y++     PFGG+K SG+GRE G Y+L
Sbjct:  419 TDYGLAAAVHTKNVNTAIRVSNALKAGTVWINNYNMISYQAPFGGFKQSGLGRELGSYAL 478          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            TR+GLAA VFT+  D A   T+AL+AGTVW N Y++     PFGG+K SG GRE G   L A
Sbjct:  442 TRYGLAAAVFTRDLDKAIYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLRA 503          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   10 FGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKG 171
            FGL A VFT   + A T++ A++AGTVW NCY+  +A  PFGG+K+SG GRE G
Sbjct:  443 FGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMG 496          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH_STRCO (Probable aldehyde dehydrogenase OS=Streptomyces coelicolor GN=SCO1174 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGRE 165
            T +GL AGV+T+  +TA    RA++AG VWTNCY  + A   FGGYK SGIGRE
Sbjct:  427 TLYGLGAGVWTRDMNTAYRAGRAIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRE 480          
The following BLAST results are available for this feature:
BLAST of CX300596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
AL2C4_ARATH2.787e-1246.88Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
AL1A3_HUMAN2.787e-1255.00Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
ALDH_AGABI6.208e-1250.82Aldehyde dehydrogenase OS=Agaricus bisporus GN=ald... [more]
AL1A2_HUMAN8.108e-1253.45Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
AL1B1_PONAB1.383e-1154.84Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_HUMAN1.383e-1154.84Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
ALDH_EMENI1.806e-1153.33Aldehyde dehydrogenase OS=Emericella nidulans GN=a... [more]
AL1B1_MOUSE1.806e-1154.84Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
AL1A2_CHICK2.359e-1155.56Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
ALDH_STRCO4.024e-1157.41Probable aldehyde dehydrogenase OS=Streptomyces co... [more]

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Properties
Property NameValue
Genbank descriptionC07012A12SK SaltLeaf1 Citrus clementina cDNA clone C07012A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300596 ID=CX300596; Name=CX300596; organism=Citrus clementina; type=EST; length=492bp
AAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAAGAGTGCAGACAC
TGCTAACACCATGACGCGTGCACTGAGAGCTGGGACTGTATGGACTAACT
GCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGGTACAAGCTGAGT
GGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGCTTTACTTTGCAA
GTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGCTCTAGTTTCC
TGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAGGACAGCGTGC
AAATATCAGCTTGTAATTATGGAGCAAATGGATAATCTTACTTTTAAAAG
AACTTTACTTTTCTTTTTGTGCTGTAAGCACAATGATGCATGTCTGTTGA
TCAAGGCAGCTTTCACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAACCTCGAGGGGGGGCCCGGT
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