CX300596

Overview
NameCX300596
Unique NameCX300596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   10 FGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            FGL A VFT   + A  ++ A++AGTVW NCY+  +A  PFGG+K+SG GRE G + L
Sbjct:  443 FGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGL 500          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   10 FGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            FGL A VFT   + A  ++ A++AGTVW NCY+  +A  PFGG+K+SG GRE G + L
Sbjct:  443 FGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGL 500          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: BETB_OCHA4 (Betaine aldehyde dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=betB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T FGLAAGVFT      + +   ++AGT W N Y++    +PFGGYK SGIGRE GI +L
Sbjct:  408 TEFGLAAGVFTADIARGHRVIGQIKAGTCWINAYNLTPVEVPFGGYKQSGIGRENGIAAL 467          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            TR+GLAA VFT+  D A   ++AL+AGTVW N Y++     PFGG+K SG GRE G   L A
Sbjct:  442 TRYGLAAAVFTRDLDKALYFSQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKA 503          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: BETB_RHILO (Betaine aldehyde dehydrogenase OS=Rhizobium loti GN=betB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            T FGLAAGVFT+    A+ +   L+AGT W N Y++    IPFGG+K SGIGRE  + +L
Sbjct:  408 TEFGLAAGVFTRDLPRAHRVIAELQAGTCWINAYNLTPVEIPFGGFKQSGIGRENSLAAL 467          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: BETB_BRUMB (Betaine aldehyde dehydrogenase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=betB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSL 183
            + FGLAAGVFT      + +   ++AGT W N Y++    +PFGGYK SGIGRE GI +L
Sbjct:  408 SEFGLAAGVFTADLSRGHHVIGQIKAGTCWINAYNLTSVEVPFGGYKQSGIGRENGIAAL 467          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH_CLAHE (Aldehyde dehydrogenase OS=Cladosporium herbarum GN=CLAH10 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   10 FGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKG 171
            +GLAA V TK+ +TA  ++ AL+AGTVW N Y+     +PFGGYK SGIGRE G
Sbjct:  420 YGLAAAVHTKNLNTAIEVSNALKAGTVWVNTYNTLHHQMPFGGYKESGIGRELG 473          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH_ALTAL (Aldehyde dehydrogenase OS=Alternaria alternata GN=ALTA10 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLN 186
            T +GLAA V T +  TA  +  ALRAGTVW N Y+     +PFGGYK SGIGRE G  +L+
Sbjct:  419 TTYGLAAAVHTSNLTTAIEVANALRAGTVWVNSYNTLHWQLPFGGYKESGIGRELGEAALD 479          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDB_ECOLI (Aldehyde dehydrogenase B OS=Escherichia coli (strain K12) GN=aldB PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGRE 165
            T++GL AGV++++ + A  M R ++AG VWTNCY  + A   FGGYK SGIGRE
Sbjct:  432 TQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRE 485          
The following BLAST results are available for this feature:
BLAST of CX300596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
AL1A2_RAT4.024e-1151.72Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE4.024e-1151.72Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
BETB_OCHA45.256e-1151.67Betaine aldehyde dehydrogenase OS=Ochrobactrum ant... [more]
AL1B1_RAT5.256e-1153.23Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
BETB_RHILO6.864e-1151.67Betaine aldehyde dehydrogenase OS=Rhizobium loti G... [more]
BETB_BRUMB8.965e-1150.00Betaine aldehyde dehydrogenase OS=Brucella meliten... [more]
ALDH_CLAHE8.965e-1157.41Aldehyde dehydrogenase OS=Cladosporium herbarum GN... [more]
ALDH_ALTAL8.965e-1154.10Aldehyde dehydrogenase OS=Alternaria alternata GN=... [more]
ALDB_ECOLI8.965e-1153.70Aldehyde dehydrogenase B OS=Escherichia coli (stra... [more]

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Properties
Property NameValue
Genbank descriptionC07012A12SK SaltLeaf1 Citrus clementina cDNA clone C07012A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300596 ID=CX300596; Name=CX300596; organism=Citrus clementina; type=EST; length=492bp
AAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAAGAGTGCAGACAC
TGCTAACACCATGACGCGTGCACTGAGAGCTGGGACTGTATGGACTAACT
GCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGGTACAAGCTGAGT
GGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGCTTTACTTTGCAA
GTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGCTCTAGTTTCC
TGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAGGACAGCGTGC
AAATATCAGCTTGTAATTATGGAGCAAATGGATAATCTTACTTTTAAAAG
AACTTTACTTTTCTTTTTGTGCTGTAAGCACAATGATGCATGTCTGTTGA
TCAAGGCAGCTTTCACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAACCTCGAGGGGGGGCCCGGT
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