CX300598

Overview
NameCX300598
Unique NameCX300598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_DROTE (Histone H2B OS=Drosophila teissieri GN=His2B PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_DROSI (Histone H2B OS=Drosophila simulans GN=His2B PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_DROSE (Histone H2B OS=Drosophila sechellia GN=His2B PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_DROOR (Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_DROME (Histone H2B OS=Drosophila melanogaster GN=His2B PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_DROMA (Histone H2B OS=Drosophila mauritiana GN=His2B PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_DROHY (Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_DROER (Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_ANOGA (Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=2 SV=5)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   35 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 72/88 (81.82%), Postives = 83/88 (94.32%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 278
            +Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   37 SYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
The following BLAST results are available for this feature:
BLAST of CX300598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_DROTE3.072e-3683.15Histone H2B OS=Drosophila teissieri GN=His2B PE=3 ... [more]
H2B_DROSI3.072e-3683.15Histone H2B OS=Drosophila simulans GN=His2B PE=3 S... [more]
H2B_DROSE3.072e-3683.15Histone H2B OS=Drosophila sechellia GN=His2B PE=3 ... [more]
H2B_DROOR3.072e-3683.15Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3[more]
H2B_DROME3.072e-3683.15Histone H2B OS=Drosophila melanogaster GN=His2B PE... [more]
H2B_DROMA3.072e-3683.15Histone H2B OS=Drosophila mauritiana GN=His2B PE=3... [more]
H2B_DROHY3.072e-3683.15Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2[more]
H2B_DROER3.072e-3683.15Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=... [more]
H2B_ANOGA3.072e-3683.15Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=... [more]
H2B1C_HUMAN3.072e-3681.82Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]

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Properties
Property NameValue
Genbank descriptionC07012B02SK SaltLeaf1 Citrus clementina cDNA clone C07012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300598 ID=CX300598; Name=CX300598; organism=Citrus clementina; type=EST; length=426bp
AATTCGGCACGTAGGCGTACAAGATCTACATATTCAAAGTCCTGAAGCAA
GTCCATCCAGATATCGGAATCTCGAGCAAGGCTATGGGAATTATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCTCAGGAATCTTCCAGGCTGG
CAAGGTACAACAAGAAGCCGACGATAACTTCTCGTGAAATCCAGACCGCT
GTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCACGCCGTTTCTGAGGG
TACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAATTAGGGTTAGGTTTC
ACTATGTGCGATGAAATTGGGGTTAGTGATGTTTGCTGTGTCCTTTCTTG
GAGTAATAATGTAAGTAGTTAGTATTAATGAAATGGCATGGTGCTGATAG
AAGTGACTAAAAAAAAAAAAAAAAAA
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