CX300598

Overview
NameCX300598
Unique NameCX300598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_CAIMO (Histone H2B OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.012e-36
Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 3
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVR +LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   37 SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRSLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B7_CHICK (Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.012e-36
Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 3
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IY++KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   37 SYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.012e-36
Identity = 72/89 (80.90%), Postives = 84/89 (94.38%), Query Frame = 3
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IY++KV+KQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   37 SYAIYVYKVMKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_SIPNU (Histone H2B OS=Sipunculus nudus GN=H2B PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 5.240e-36
Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 3
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YN++ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNRRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B1N_BOVIN (Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 6.844e-36
Identity = 72/89 (80.90%), Postives = 83/89 (93.26%), Query Frame = 3
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y +Y++KVLKQVHPD GISSKAMG MNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   37 SYSVYVYKVLKQVHPDTGISSKAMGNMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B1K_MACFA (Histone H2B type 1-K OS=Macaca fascicularis GN=HIST1H2BK PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 6.844e-36
Identity = 71/89 (79.78%), Postives = 84/89 (94.38%), Query Frame = 3
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y +Y++KVLK+VHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   37 SYSVYVYKVLKRVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_ASTPE (Histone H2B OS=Asterina pectinifera PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.938e-36
Identity = 72/89 (80.90%), Postives = 83/89 (93.26%), Query Frame = 3
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KV+KQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 SYGIYIYKVMKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2BFS_HUMAN (Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.938e-36
Identity = 71/89 (79.78%), Postives = 83/89 (93.26%), Query Frame = 3
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRL  YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   37 SYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLPHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B1A_MOUSE (Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 8.938e-36
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 3
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   38 SYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_RHASC (Histone H2B OS=Rhacophorus schlegelii GN=histh2b PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.167e-35
Identity = 72/89 (80.90%), Postives = 83/89 (93.26%), Query Frame = 3
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IY++KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   37 SYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
The following BLAST results are available for this feature:
BLAST of CX300598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_CAIMO4.012e-3682.02Histone H2B OS=Cairina moschata PE=3 SV=2[more]
H2B7_CHICK4.012e-3682.02Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=... [more]
H2B12_XENLA4.012e-3680.90Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2[more]
H2B_SIPNU5.240e-3682.02Histone H2B OS=Sipunculus nudus GN=H2B PE=1 SV=2[more]
H2B1N_BOVIN6.844e-3680.90Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE... [more]
H2B1K_MACFA6.844e-3679.78Histone H2B type 1-K OS=Macaca fascicularis GN=HIS... [more]
H2B_ASTPE8.938e-3680.90Histone H2B OS=Asterina pectinifera PE=1 SV=2[more]
H2BFS_HUMAN8.938e-3679.78Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1... [more]
H2B1A_MOUSE8.938e-3682.02Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba ... [more]
H2B_RHASC1.167e-3580.90Histone H2B OS=Rhacophorus schlegelii GN=histh2b P... [more]

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Properties
Property NameValue
Genbank descriptionC07012B02SK SaltLeaf1 Citrus clementina cDNA clone C07012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300598 ID=CX300598; Name=CX300598; organism=Citrus clementina; type=EST; length=426bp
AATTCGGCACGTAGGCGTACAAGATCTACATATTCAAAGTCCTGAAGCAA
GTCCATCCAGATATCGGAATCTCGAGCAAGGCTATGGGAATTATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCTCAGGAATCTTCCAGGCTGG
CAAGGTACAACAAGAAGCCGACGATAACTTCTCGTGAAATCCAGACCGCT
GTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCACGCCGTTTCTGAGGG
TACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAATTAGGGTTAGGTTTC
ACTATGTGCGATGAAATTGGGGTTAGTGATGTTTGCTGTGTCCTTTCTTG
GAGTAATAATGTAAGTAGTTAGTATTAATGAAATGGCATGGTGCTGATAG
AAGTGACTAAAAAAAAAAAAAAAAAA
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