CX300598

Overview
NameCX300598
Unique NameCX300598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_URECA (Histone H2B OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.525e-35
Identity = 72/89 (80.90%), Postives = 82/89 (92.13%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YN++ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+T S
Sbjct:   34 SYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNRRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTQS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2BL3_STRPU (Late histone H2B.L3 OS=Strongylocentrotus purpuratus PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 1.525e-35
Identity = 71/89 (79.78%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISS+AM IMNSF+ND+FE++A E+SRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 SYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2BE_STRPU (Histone H2B, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.525e-35
Identity = 73/89 (82.02%), Postives = 84/89 (94.38%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISS+AM IMNSF+NDIFE++A ESSRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   35 SYGIYIYKVLKQVHPDTGISSRAMVIMNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 123
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B4_CAEEL (Probable histone H2B 4 OS=Caenorhabditis elegans GN=his-48 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 1.525e-35
Identity = 69/89 (77.53%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A E+SRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B3_CAEEL (Probable histone H2B 3 OS=Caenorhabditis elegans GN=his-41 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 1.525e-35
Identity = 69/89 (77.53%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A E+SRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B1A_RAT (Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1h2ba PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.525e-35
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   38 SYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B11_XENLA (Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.525e-35
Identity = 71/89 (79.78%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IY++KVLKQVHPD GISSKAM IMNSF+ND+FE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   37 SYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_MARGL (Histone H2B, sperm OS=Marthasterias glacialis PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.991e-35
Identity = 71/89 (79.78%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KV+KQVHPD GISS+AM IMNSF+NDIFE++A E+SRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   32 SYGIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 120
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_ASTRU (Histone H2B, gonadal OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.991e-35
Identity = 71/89 (79.78%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KV+KQVHPD GISS+AM IMNSF+NDIFE++A E+SRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 SYGIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2BE2_PSAMI (Histone H2B.2, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.991e-35
Identity = 73/89 (82.02%), Postives = 84/89 (94.38%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISS+AM IMNSF+NDIFE++A ESSRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 SYGIYIYKVLKQVHPDTGISSRAMIIMNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 122
The following BLAST results are available for this feature:
BLAST of CX300598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_URECA1.525e-3580.90Histone H2B OS=Urechis caupo PE=3 SV=2[more]
H2BL3_STRPU1.525e-3579.78Late histone H2B.L3 OS=Strongylocentrotus purpurat... [more]
H2BE_STRPU1.525e-3582.02Histone H2B, embryonic OS=Strongylocentrotus purpu... [more]
H2B4_CAEEL1.525e-3577.53Probable histone H2B 4 OS=Caenorhabditis elegans G... [more]
H2B3_CAEEL1.525e-3577.53Probable histone H2B 3 OS=Caenorhabditis elegans G... [more]
H2B1A_RAT1.525e-3582.02Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1... [more]
H2B11_XENLA1.525e-3579.78Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2[more]
H2B_MARGL1.991e-3579.78Histone H2B, sperm OS=Marthasterias glacialis PE=1... [more]
H2B_ASTRU1.991e-3579.78Histone H2B, gonadal OS=Asterias rubens PE=1 SV=2[more]
H2BE2_PSAMI1.991e-3582.02Histone H2B.2, embryonic OS=Psammechinus miliaris ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012B02SK SaltLeaf1 Citrus clementina cDNA clone C07012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300598 ID=CX300598; Name=CX300598; organism=Citrus clementina; type=EST; length=426bp
AATTCGGCACGTAGGCGTACAAGATCTACATATTCAAAGTCCTGAAGCAA
GTCCATCCAGATATCGGAATCTCGAGCAAGGCTATGGGAATTATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCTCAGGAATCTTCCAGGCTGG
CAAGGTACAACAAGAAGCCGACGATAACTTCTCGTGAAATCCAGACCGCT
GTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCACGCCGTTTCTGAGGG
TACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAATTAGGGTTAGGTTTC
ACTATGTGCGATGAAATTGGGGTTAGTGATGTTTGCTGTGTCCTTTCTTG
GAGTAATAATGTAAGTAGTTAGTATTAATGAAATGGCATGGTGCTGATAG
AAGTGACTAAAAAAAAAAAAAAAAAA
back to top