CX300598

Overview
NameCX300598
Unique NameCX300598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.205e-40
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 3
Query:   18 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE++RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   65 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.574e-40
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   18 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   66 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.574e-40
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   18 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   66 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSI (Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.574e-40
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   18 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   66 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 1.574e-40
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   18 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B5_ARATH (Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 1.574e-40
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 3
Query:    9 T*AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            T  YKIY+FKVLKQVHPDIGIS KAMGIMNSFIND FEK+A ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   36 TETYKIYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 126          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 2.056e-40
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 3
Query:    6 GT*AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            G   YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 GVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.685e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   18 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   66 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B1_MAIZE (Histone H2B.1 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 2.685e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   18 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   64 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 151          
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 3.507e-40
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   18 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPT+TSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   66 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
The following BLAST results are available for this feature:
BLAST of CX300598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_ORYSI1.205e-4094.32Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]
H2B8_ORYSJ1.574e-4095.45Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B8_ORYSI1.574e-4095.45Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B6_ORYSI1.574e-4095.45Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_WHEAT1.574e-4095.45Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B5_ARATH1.574e-4092.31Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480... [more]
H2B2_WHEAT2.056e-4091.30Histone H2B.2 OS=Triticum aestivum PE=1 SV=2[more]
H2B6_ORYSJ2.685e-4094.32Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_MAIZE2.685e-4094.32Histone H2B.1 OS=Zea mays PE=2 SV=3[more]
H2B3_MAIZE3.507e-4093.18Histone H2B.3 OS=Zea mays PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC07012B02SK SaltLeaf1 Citrus clementina cDNA clone C07012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300598 ID=CX300598; Name=CX300598; organism=Citrus clementina; type=EST; length=426bp
AATTCGGCACGTAGGCGTACAAGATCTACATATTCAAAGTCCTGAAGCAA
GTCCATCCAGATATCGGAATCTCGAGCAAGGCTATGGGAATTATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCTCAGGAATCTTCCAGGCTGG
CAAGGTACAACAAGAAGCCGACGATAACTTCTCGTGAAATCCAGACCGCT
GTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCACGCCGTTTCTGAGGG
TACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAATTAGGGTTAGGTTTC
ACTATGTGCGATGAAATTGGGGTTAGTGATGTTTGCTGTGTCCTTTCTTG
GAGTAATAATGTAAGTAGTTAGTATTAATGAAATGGCATGGTGCTGATAG
AAGTGACTAAAAAAAAAAAAAAAAAA
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