CX300598

Overview
NameCX300598
Unique NameCX300598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_PLADU (Histone H2B OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.352e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.352e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   27 SYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 115
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_ACRFO (Histone H2B OS=Acropora formosa PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.352e-36
Identity = 74/89 (83.15%), Postives = 84/89 (94.38%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAMGIMNSF+NDIFE++A ESSRL+ YNKK TI+SREIQTA+RL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 SYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRLLLPGELAKHAVSEGTKAVTKYTSS 124
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B3_TIGCA (Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.352e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B2E_MOUSE (Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 2.352e-36
Identity = 72/89 (80.90%), Postives = 84/89 (94.38%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQT+VRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   37 SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIANEASRLAHYNKRSTITSREIQTSVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B1_TIGCA (Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.352e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B1K_HUMAN (Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 2.352e-36
Identity = 72/89 (80.90%), Postives = 84/89 (94.38%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   37 SYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B1K_BOVIN (Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 2.352e-36
Identity = 72/89 (80.90%), Postives = 84/89 (94.38%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   37 SYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_PATGR (Histone H2B, gonadal OS=Patella granatina PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD G+SSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 SYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 121
[Close]
BLAST of CX300598 vs. ExPASy Swiss-Prot
Match: H2B_DROYA (Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:   15 AYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 281
            +Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 SYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
The following BLAST results are available for this feature:
BLAST of CX300598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_PLADU2.352e-3683.15Histone H2B OS=Platynereis dumerilii PE=3 SV=2[more]
H2B_LITVA2.352e-3683.15Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]
H2B_ACRFO2.352e-3683.15Histone H2B OS=Acropora formosa PE=3 SV=1[more]
H2B3_TIGCA2.352e-3683.15Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2[more]
H2B2E_MOUSE2.352e-3680.90Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be ... [more]
H2B1_TIGCA2.352e-3683.15Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3... [more]
H2B1K_HUMAN2.352e-3680.90Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK ... [more]
H2B1K_BOVIN2.352e-3680.90Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE... [more]
H2B_PATGR3.072e-3682.02Histone H2B, gonadal OS=Patella granatina PE=1 SV=... [more]
H2B_DROYA3.072e-3683.15Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC07012B02SK SaltLeaf1 Citrus clementina cDNA clone C07012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300598 ID=CX300598; Name=CX300598; organism=Citrus clementina; type=EST; length=426bp
AATTCGGCACGTAGGCGTACAAGATCTACATATTCAAAGTCCTGAAGCAA
GTCCATCCAGATATCGGAATCTCGAGCAAGGCTATGGGAATTATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCTCAGGAATCTTCCAGGCTGG
CAAGGTACAACAAGAAGCCGACGATAACTTCTCGTGAAATCCAGACCGCT
GTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCACGCCGTTTCTGAGGG
TACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAATTAGGGTTAGGTTTC
ACTATGTGCGATGAAATTGGGGTTAGTGATGTTTGCTGTGTCCTTTCTTG
GAGTAATAATGTAAGTAGTTAGTATTAATGAAATGGCATGGTGCTGATAG
AAGTGACTAAAAAAAAAAAAAAAAAA
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