CX300611

Overview
NameCX300611
Unique NameCX300611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig614 contig Ccv1_Contig614:86..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.013e-63
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+LSR GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G VEGYRI                +FDPLG
Sbjct:   51 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 139

HSP 2 Score: 128.257 bits (321), Expect = 1.013e-63
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  141 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.719e-63
Identity = 66/89 (74.16%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+LSR GVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G VEGYRI                +FDPLG
Sbjct:  107 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 195

HSP 2 Score: 127.102 bits (318), Expect = 1.719e-63
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 468
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWAYATNFVPG
Sbjct:  197 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.241e-63
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGC+FPE+LS+ GV+FGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL G +EGYR+                AFDPLG
Sbjct:  109 LGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLG 197

HSP 2 Score: 129.798 bits (325), Expect = 2.241e-63
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWA+ATNFVPGK
Sbjct:  199 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.809e-63
Identity = 64/89 (71.91%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+L G VEGYRI                +FDPLG
Sbjct:  119 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 207

HSP 2 Score: 126.716 bits (317), Expect = 3.809e-63
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  209 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.476e-63
Identity = 62/89 (69.66%), Postives = 68/89 (76.40%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+L G +EGYR+                 FDPLG
Sbjct:  123 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLG 211

HSP 2 Score: 129.798 bits (325), Expect = 6.476e-63
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  213 ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.101e-62
Identity = 64/89 (71.91%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G VEGYRI                +FDPLG
Sbjct:  112 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 200

HSP 2 Score: 125.946 bits (315), Expect = 1.101e-62
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  202 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.101e-62
Identity = 63/89 (70.79%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G VEGYR+                +FDPLG
Sbjct:  112 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 200

HSP 2 Score: 126.331 bits (316), Expect = 1.101e-62
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  202 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.101e-62
Identity = 62/89 (69.66%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G +EGYR+                +FDPLG
Sbjct:  112 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLG 200

HSP 2 Score: 126.716 bits (317), Expect = 1.101e-62
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWAYATNFVPGK
Sbjct:  202 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.436e-62
Identity = 63/89 (70.79%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G VEGYR+                +FDPLG
Sbjct:  112 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 200

HSP 2 Score: 125.946 bits (315), Expect = 1.436e-62
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.873e-62
Identity = 62/89 (69.66%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+L G VEGYR+                +FDPLG
Sbjct:  110 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 198

HSP 2 Score: 125.946 bits (315), Expect = 1.873e-62
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  200 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of CX300611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB22_CUCSA1.013e-6373.03Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_MAIZE1.719e-6374.16Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI2.241e-6369.66Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY3.809e-6371.91Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY6.476e-6369.66Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2G_SOLLC1.101e-6271.91Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB25_PETSP1.101e-6270.79Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB27_TOBAC1.101e-6269.66Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_TOBAC1.436e-6270.79Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_TOBAC1.873e-6269.66Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07012C04SK SaltLeaf1 Citrus clementina cDNA clone C07012C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300611 ID=CX300611; Name=CX300611; organism=Citrus clementina; type=EST; length=606bp
CTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAGAACTGGAGTGAAGTTC
GGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGG
CCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGG
CTATCTGGGCCTGCCAGGTTGTGCTCACGGGTTTTGTTGAAGGATACAGA
ATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGG
TGCTTTTGACCCACTTGGTTTTGGCTGATGACCCCGATCAATTTGCTGAG
TTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTT
TGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACC
TCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCC
ACTAATTTTGTTCCCGGAAAGTGAAGAAACTCATGATTTGATGGTGTCTG
TTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACT
CTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTAT
GCTCCT
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