CX300611
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 7.058e-62 Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G VEGYRI +FDPLG Sbjct: 110 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 198 HSP 2 Score: 122.865 bits (307), Expect = 7.058e-62 Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ F ELKVKELK GRLAM SMFGFFVQAIVTGKGP+ENL DHIADPV NNAWAYATNFVPGK Sbjct: 200 ADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 9.202e-62 Identity = 63/89 (70.79%), Postives = 69/89 (77.53%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPE+LSR GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+L G VEGYRI +FDPLG Sbjct: 113 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 201 HSP 2 Score: 125.946 bits (315), Expect = 9.202e-62 Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV NNAW+YATNFVPGK Sbjct: 203 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 9.202e-62 Identity = 61/89 (68.54%), Postives = 69/89 (77.53%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPE+L+R GVKFGEAVWFK G+QIFS+GGLDYLGNP+L+HAQSILAIWACQVVL G VEGYR+ +FDPLG Sbjct: 112 LGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLG 200 HSP 2 Score: 125.946 bits (315), Expect = 9.202e-62 Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK Sbjct: 202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 9.204e-62 Identity = 64/89 (71.91%), Postives = 69/89 (77.53%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPE+LSR GVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+L G VEGYRI +FDPLG Sbjct: 108 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 196 HSP 2 Score: 125.561 bits (314), Expect = 9.204e-62 Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A PV NNAWAYATNFVPGK Sbjct: 198 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.200e-61 Identity = 63/89 (70.79%), Postives = 70/89 (78.65%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G VEGYR+ +FDPLG Sbjct: 112 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 200 HSP 2 Score: 122.865 bits (307), Expect = 1.200e-61 Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 A+DP+ FAELKVK +KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK Sbjct: 202 AEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.522e-61 Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCV PE+L++ GVKFGEAVWFKAG+QIF+EGGLDYLGNP+L+HAQSILAIWACQV+L G VEGYR+ +FDPLG Sbjct: 110 LGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLG 198 HSP 2 Score: 126.716 bits (317), Expect = 4.522e-61 Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADP NNAWAYATNF PGK Sbjct: 200 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.315e-60 Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK Sbjct: 85 ADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150 HSP 2 Score: 122.479 bits (306), Expect = 1.315e-60 Identity = 59/83 (71.08%), Postives = 63/83 (75.90%), Query Frame = 3 Query: 21 EILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 E+L + GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL G +EGYR+ AFDPLG Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLG 83
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.222e-60 Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPE+L+R GVKFGEAVWFK G+QIFSEGGL YLGNP+L+HAQSILAIWACQVVL G VEGYR+ +FDPLG Sbjct: 109 LGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 197 HSP 2 Score: 122.865 bits (307), Expect = 2.222e-60 Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADD + FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK Sbjct: 199 ADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.777e-60 Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1 Query: 277 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 DDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ DPV NNAWAYATNFVPGK Sbjct: 200 DDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264 HSP 2 Score: 125.561 bits (314), Expect = 3.777e-60 Identity = 59/91 (64.84%), Postives = 67/91 (73.63%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGFG 275 LGCVFPE+L+R GVKFGE VWFKAG+QIFSEGGL + GNP+L+HAQSILAIWACQVVL G VEGY + +FDPLG G Sbjct: 109 LGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLG 199
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 4.925e-60 Identity = 60/89 (67.42%), Postives = 69/89 (77.53%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL+IWA QV+L G VEGYR+ +FDPLG Sbjct: 109 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLG 197 HSP 2 Score: 122.865 bits (307), Expect = 4.925e-60 Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 A+DP++ AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK Sbjct: 199 AEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264 The following BLAST results are available for this feature:
BLAST of CX300611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300611 ID=CX300611; Name=CX300611; organism=Citrus clementina; type=EST; length=606bpback to top |