CX300611

Overview
NameCX300611
Unique NameCX300611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.058e-62
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 3
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G VEGYRI                +FDPLG
Sbjct:  110 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 198          

HSP 2 Score: 122.865 bits (307), Expect = 7.058e-62
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 1
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ F ELKVKELK GRLAM SMFGFFVQAIVTGKGP+ENL DHIADPV NNAWAYATNFVPGK
Sbjct:  200 ADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.202e-62
Identity = 63/89 (70.79%), Postives = 69/89 (77.53%), Query Frame = 3
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+LSR GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+L G VEGYRI                +FDPLG
Sbjct:  113 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 201          

HSP 2 Score: 125.946 bits (315), Expect = 9.202e-62
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV NNAW+YATNFVPGK
Sbjct:  203 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.202e-62
Identity = 61/89 (68.54%), Postives = 69/89 (77.53%), Query Frame = 3
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFK G+QIFS+GGLDYLGNP+L+HAQSILAIWACQVVL G VEGYR+                +FDPLG
Sbjct:  112 LGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLG 200          

HSP 2 Score: 125.946 bits (315), Expect = 9.202e-62
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 9.204e-62
Identity = 64/89 (71.91%), Postives = 69/89 (77.53%), Query Frame = 3
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+LSR GVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+L G VEGYRI                +FDPLG
Sbjct:  108 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 196          

HSP 2 Score: 125.561 bits (314), Expect = 9.204e-62
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A PV NNAWAYATNFVPGK
Sbjct:  198 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.200e-61
Identity = 63/89 (70.79%), Postives = 70/89 (78.65%), Query Frame = 3
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G VEGYR+                +FDPLG
Sbjct:  112 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 200          

HSP 2 Score: 122.865 bits (307), Expect = 1.200e-61
Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 1
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+DP+ FAELKVK +KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  202 AEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.522e-61
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 3
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCV PE+L++ GVKFGEAVWFKAG+QIF+EGGLDYLGNP+L+HAQSILAIWACQV+L G VEGYR+                +FDPLG
Sbjct:  110 LGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLG 198          

HSP 2 Score: 126.716 bits (317), Expect = 4.522e-61
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 1
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADP  NNAWAYATNF PGK
Sbjct:  200 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.315e-60
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:   85 ADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          

HSP 2 Score: 122.479 bits (306), Expect = 1.315e-60
Identity = 59/83 (71.08%), Postives = 63/83 (75.90%), Query Frame = 3
Query:   21 EILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            E+L + GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL G +EGYR+                AFDPLG
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLG 83          
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.222e-60
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 3
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFK G+QIFSEGGL YLGNP+L+HAQSILAIWACQVVL G VEGYR+                +FDPLG
Sbjct:  109 LGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 197          

HSP 2 Score: 122.865 bits (307), Expect = 2.222e-60
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADD + FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  199 ADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.777e-60
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1
Query:  277 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            DDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ DPV NNAWAYATNFVPGK
Sbjct:  200 DDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          

HSP 2 Score: 125.561 bits (314), Expect = 3.777e-60
Identity = 59/91 (64.84%), Postives = 67/91 (73.63%), Query Frame = 3
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGFG 275
            LGCVFPE+L+R GVKFGE VWFKAG+QIFSEGGL + GNP+L+HAQSILAIWACQVVL G VEGY +                +FDPLG G
Sbjct:  109 LGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLG 199          
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.925e-60
Identity = 60/89 (67.42%), Postives = 69/89 (77.53%), Query Frame = 3
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL+IWA QV+L G VEGYR+                +FDPLG
Sbjct:  109 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLG 197          

HSP 2 Score: 122.865 bits (307), Expect = 4.925e-60
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+DP++ AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  199 AEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
The following BLAST results are available for this feature:
BLAST of CX300611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB22_MAIZE7.058e-6273.03Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB28_PEA9.202e-6270.79Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_NICPL9.202e-6268.54Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_SOYBN9.204e-6271.91Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB25_TOBAC1.200e-6170.79Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_POLMU4.522e-6166.29Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_PINSY1.315e-6092.42Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_HORVU2.222e-6068.54Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB48_MAIZE3.777e-6089.23Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB23_APIGR4.925e-6067.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07012C04SK SaltLeaf1 Citrus clementina cDNA clone C07012C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300611 ID=CX300611; Name=CX300611; organism=Citrus clementina; type=EST; length=606bp
CTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAGAACTGGAGTGAAGTTC
GGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGG
CCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGG
CTATCTGGGCCTGCCAGGTTGTGCTCACGGGTTTTGTTGAAGGATACAGA
ATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGG
TGCTTTTGACCCACTTGGTTTTGGCTGATGACCCCGATCAATTTGCTGAG
TTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTT
TGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACC
TCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCC
ACTAATTTTGTTCCCGGAAAGTGAAGAAACTCATGATTTGATGGTGTCTG
TTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACT
CTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTAT
GCTCCT
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