CX300611

Overview
NameCX300611
Unique NameCX300611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig614 contig Ccv1_Contig614:86..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.430e-60
Identity = 63/89 (70.79%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+LSR GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+L G VEGYRI                +FDPLG
Sbjct:   73 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 161

HSP 2 Score: 119.783 bits (299), Expect = 6.430e-60
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+ P+ FAELKVKELKNGRLAMFSMFGFFV AIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  163 AEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.375e-60
Identity = 64/97 (65.98%), Postives = 72/97 (74.23%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGFG**PRSI 293
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+L G VEGYRI                +FDPLG    P ++
Sbjct:  101 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAL 197

HSP 2 Score: 119.398 bits (298), Expect = 8.375e-60
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+  AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYAT   PGK
Sbjct:  191 ADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.856e-59
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGC+ PE+L+++GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G VEGYR+                +FDPLG
Sbjct:  113 LGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLG 201

HSP 2 Score: 119.398 bits (298), Expect = 1.856e-59
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 468
            ADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPVANNAWAYA    PG
Sbjct:  203 ADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.154e-59
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  202 ATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 123.635 bits (309), Expect = 3.154e-59
Identity = 60/90 (66.67%), Postives = 69/90 (76.67%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+L G VEGYR+                 +FDPLG
Sbjct:  111 LGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLG 200
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.154e-59
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  202 ATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 123.635 bits (309), Expect = 3.154e-59
Identity = 60/90 (66.67%), Postives = 69/90 (76.67%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+L G VEGYR+                 +FDPLG
Sbjct:  111 LGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLG 200
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.157e-59
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A+PV NNAWAYATNFVPGK
Sbjct:  180 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245

HSP 2 Score: 122.479 bits (306), Expect = 3.157e-59
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPL 266
            LGCVFPE+L+R GVKFGEA WFKAG+QIFSEGGLDYLGN +LIHAQSILAIWA QV+L G VEGYRI                +FDPL
Sbjct:   90 LGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPL 177
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.113e-59
Identity = 61/90 (67.78%), Postives = 69/90 (76.67%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L+R GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+L G VEGYR+                 +FDPLG
Sbjct:  110 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLG 199

HSP 2 Score: 123.25 bits (308), Expect = 4.113e-59
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  201 ATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.991e-59
Identity = 60/89 (67.42%), Postives = 68/89 (76.40%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+ +R GVKFGEAVW KAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+L G VEGYR+                +FDPLG
Sbjct:  112 LGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLG 200

HSP 2 Score: 118.627 bits (296), Expect = 6.991e-59
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+DP+ FAELKVKE KNGRLAMFSMFGFF+QAIVTGKGP+ENL DH+ DPV NNAW+YATNFVP K
Sbjct:  202 AEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.020e-58
Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGFG**PRS 290
            LGCVFPE+L+R GVKFGEA WFKAG+QIFS+GGLDYLGNP+L+HAQS+LAIWACQVVL G VEGYRI                +FDPLG    P++
Sbjct:  111 LGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQA 206

HSP 2 Score: 115.931 bits (289), Expect = 2.020e-58
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+ P  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E+L DHIADPV NNAW  ATNFVPGK
Sbjct:  201 AERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.409e-52
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 468
            ADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPVANNAW +AT F PG
Sbjct:  203 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267

HSP 2 Score: 105.145 bits (261), Expect = 7.409e-52
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 LGCVFPEILSR-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRI 203
            LGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+L G VEG+RI
Sbjct:  111 LGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 178
The following BLAST results are available for this feature:
BLAST of CX300611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_PEA6.430e-6070.79Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_SOYBN8.375e-6065.98Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_PHYPA1.856e-5968.54Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ARATH3.154e-5989.39Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH3.154e-5989.39Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_SOYBN3.157e-5987.88Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_SINAL4.113e-5967.78Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_PETSP6.991e-5967.42Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_WHEAT2.020e-5864.58Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU7.409e-5283.08Chlorophyll a-b binding protein of LHCII type III,... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012C04SK SaltLeaf1 Citrus clementina cDNA clone C07012C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300611 ID=CX300611; Name=CX300611; organism=Citrus clementina; type=EST; length=606bp
CTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAGAACTGGAGTGAAGTTC
GGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGG
CCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGG
CTATCTGGGCCTGCCAGGTTGTGCTCACGGGTTTTGTTGAAGGATACAGA
ATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGG
TGCTTTTGACCCACTTGGTTTTGGCTGATGACCCCGATCAATTTGCTGAG
TTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTT
TGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACC
TCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCC
ACTAATTTTGTTCCCGGAAAGTGAAGAAACTCATGATTTGATGGTGTCTG
TTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACT
CTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTAT
GCTCCT
back to top