CX300611

Overview
NameCX300611
Unique NameCX300611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig614 contig Ccv1_Contig614:86..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.260e-51
Identity = 53/89 (59.55%), Postives = 65/89 (73.03%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGC  PE+L+++G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A  A QV+L G +EGYR+                +FDPLG
Sbjct:   98 LGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLG 186

HSP 2 Score: 109.383 bits (272), Expect = 1.260e-51
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 465
            ADDPD FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP++NL DH+A+P  NNA+A+AT F P
Sbjct:  188 ADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.049e-50
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 468
            ADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct:  200 ADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264

HSP 2 Score: 100.908 bits (250), Expect = 1.049e-50
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 3 
Query:    3 LGCVFPEILSR-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRI 203
            LGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+   QVVL G VEG+RI
Sbjct:  108 LGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 175
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.614e-48
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 465
            ADDPD FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGPI+NL DH+ADP  NNA+A AT F P
Sbjct:  191 ADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254

HSP 2 Score: 103.605 bits (257), Expect = 1.614e-48
Identity = 54/90 (60.00%), Postives = 62/90 (68.89%), Query Frame = 3 
Query:    3 LGCVFPEILSR-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LG + PE+LS   GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A  A QVVL G +EGYR+                +FDPLG
Sbjct:  100 LGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLG 189
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.457e-46
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRI 203
            LGC+FPE+LS  G  FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW  +V+L G VEGYRI
Sbjct:  114 LGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI 180

HSP 2 Score: 91.2781 bits (225), Expect = 1.457e-46
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 468
            A+D + FAELKVKELKNGRLAMFSMFGFFVQAIV+ K  +ENL DH+   V NNA +  TNFVPG
Sbjct:  203 AEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.899e-46
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 465
            ADDPD FAELKVKE+KNGRLAMF+  GFFVQAIVTGKGPIENL DH+A+P  NNA+AYAT F P
Sbjct:  209 ADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272

HSP 2 Score: 96.6709 bits (239), Expect = 1.899e-46
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = 3 
Query:    3 LGCVFPEILS-RTGVKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LG V PE+L+   G+KFG+A +WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A QVVL G VEGYR+                AFDPLG
Sbjct:  117 LGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLG 207
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.947e-44
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 468
            ADDPD FAELKVKE+KNGRLAMFS  GFFVQAIVTGKGP++NL DH+ADP  N A+A AT F PG
Sbjct:  188 ADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252

HSP 2 Score: 90.1225 bits (222), Expect = 4.947e-44
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 3 
Query:    3 LGCVFPEILSR-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYR 200
            LG + PE+LS+  GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A QVVL G  E YR
Sbjct:   95 LGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR 161
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.884e-40
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:  280 DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:   61 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124

HSP 2 Score: 61.6178 bits (148), Expect = 6.884e-40
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 3 
Query:  102 LDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRI 203
            LDYLGNP+L+HAQSILAIWA QV+L G VEGYR+
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 34
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.326e-39
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 56.225 bits (134), Expect = 3.326e-39
Identity = 28/49 (57.14%), Postives = 31/49 (63.27%), Query Frame = 3 
Query:  123 NLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            +L+HAQSILAIWACQVVL G VEGYRI                +FDPLG
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 200
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.326e-39
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 56.225 bits (134), Expect = 3.326e-39
Identity = 28/49 (57.14%), Postives = 31/49 (63.27%), Query Frame = 3 
Query:  123 NLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            +L+HAQSILAIWACQVVL G VEGYRI                +FDPLG
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 200
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.396e-39
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:   51 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

HSP 2 Score: 56.225 bits (134), Expect = 4.396e-39
Identity = 28/49 (57.14%), Postives = 31/49 (63.27%), Query Frame = 3 
Query:  123 NLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            +L+HAQSILAIWACQVVL G VEGYRI                +FDPLG
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 49
The following BLAST results are available for this feature:
BLAST of CX300611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB2_CHLRE1.260e-5159.55Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC1.049e-5084.62Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLMO1.614e-4881.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.457e-4679.10Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNSA1.899e-4679.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE4.947e-4476.92Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_RAPSA6.884e-4087.50Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2F_SOLLC3.326e-3987.88Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.326e-3987.88Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC4.396e-3986.36Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC07012C04SK SaltLeaf1 Citrus clementina cDNA clone C07012C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300611 ID=CX300611; Name=CX300611; organism=Citrus clementina; type=EST; length=606bp
CTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAGAACTGGAGTGAAGTTC
GGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGG
CCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGG
CTATCTGGGCCTGCCAGGTTGTGCTCACGGGTTTTGTTGAAGGATACAGA
ATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGG
TGCTTTTGACCCACTTGGTTTTGGCTGATGACCCCGATCAATTTGCTGAG
TTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTT
TGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACC
TCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCC
ACTAATTTTGTTCCCGGAAAGTGAAGAAACTCATGATTTGATGGTGTCTG
TTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACT
CTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTAT
GCTCCT
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