CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.968e-23
Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+C+A+I+IR E A+IE G +D   N LK APHP  +L  + W  P SRE AA PA WLR  KFWPA  R+DN YGDR+L+CT
Sbjct:  863 LDRFCEAMIAIRSEIAEIEAGVSDRQQNPLKNAPHPALMLATEPWPYPYSREVAAYPAPWLREYKFWPAVARIDNAYGDRHLVCT 947          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ANASP (Glycine dehydrogenase [decarboxylating] OS=Anabaena sp. (strain PCC 7120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.968e-23
Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+ALI+IR+E A IE GK DI +N LK APH    L+   W  P SRE AA PA W R  KFWP+ GR+D  +GDRN +C+ LP
Sbjct:  891 LDRFCEALIAIRQEIADIEAGKVDIQDNSLKNAPHTVESLIVGEWPHPYSREQAAYPAPWTREHKFWPSVGRIDAAFGDRNFVCSCLP 978          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BDEBA (Glycine dehydrogenase [decarboxylating] OS=Bdellovibrio bacteriovorus GN=gcvP PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.700e-22
Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+ +++++IR+E A +E GK D  NN LK APH   +LM   W  P SRE A  P  WLR  KFWP  GRVDN YGDRNLIC+
Sbjct:  865 LDRFIESMVTIRKEIAAVETGKMDKENNALKNAPHTAQMLMKPEWNHPYSREEAVYPVEWLRGNKFWPVVGRVDNAYGDRNLICS 949          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIN (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans GN=gcvP PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.207e-21
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A++ I +E   ++NG  D  +N LK +PH  +++  D W     RE AA PASWL+  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  872 LDRFCEAMLLIYQEILDVQNGTLDKTDNPLKNSPHTAAMVTSDRWDHLYPRERAAYPASWLKDHKFWPYVGRVDNVYGDRNLVCSCLP 959          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_DICDI (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Dictyostelium discoideum GN=gcvP PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR CDALI IREE  +IE GKAD  NNVL  +PH   +++ D W  P SR  AA P      +KFWP  GR+DNV+GD+NL+C+  P
Sbjct:  902 LDRLCDALILIREEIREIETGKADRKNNVLVNSPHTEKVIVADNWNYPYSRSKAAFPTPATVASKFWPTVGRIDNVHGDKNLVCSCPP 989          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BORPD (Glycine dehydrogenase [decarboxylating] OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gcvP PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            L+R+ DA+I+IREE AQ+E G+ D  +NVLK APH   +L+ + W     R+ AA P + LR AK+WP   RVDN YGDRNL+C  LP
Sbjct:  865 LERFIDAMIAIREEIAQVERGERDRDDNVLKNAPHTAQMLLAEEWLHDYPRQQAAYPVASLRDAKYWPPVARVDNAYGDRNLVCACLP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIC (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A++ I +E   +++G  D  +N LK +PH  +++  D W     RE AA PASWL+  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  872 LDRFCEAMLLIYQEILDVQSGTLDKTDNPLKNSPHTAAMVTSDRWDHLYPRERAAYPASWLKDHKFWPYVGRVDNVYGDRNLVCSCLP 959          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_FLAJ1 (Glycine dehydrogenase [decarboxylating] OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=gcvP PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.591e-20
Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALISIR+E   IE   AD  NNVLK APH  ++L  D+W  P SRE AA P  ++   KFWP+  RVD+ YGDRNL+C+  P
Sbjct:  858 LDRFCDALISIRKE---IEAATADDKNNVLKNAPHTLAMLTSDSWDFPYSREKAAYPLEYIADNKFWPSVRRVDDAYGDRNLVCSCAP 942          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PROMM (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvP PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            L+R+CDA+I+IREE A IE+G+ D  NN L+ APH  + +  + W +P SR  AA P +  R +KFWPA  R+DN YGDRNL+C+
Sbjct:  860 LNRFCDAMIAIREETAAIESGQIDPQNNPLRRAPHTLAAVTAEVWDRPYSRAEAAFPLAEQRQSKFWPAVSRIDNAYGDRNLLCS 944          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PROM3 (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvP PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            L+R+CDA+I+IREE A IE+G+ D  NN L+ APH  + +  + W +P SR  AA P +  R +KFWPA  R+DN YGDRNL+C+
Sbjct:  880 LNRFCDAMIAIREETAAIESGQIDPQNNPLRRAPHTLAAVTAEVWDRPYSRAEAAFPLAEQRQSKFWPAVSRIDNAYGDRNLLCS 964          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_THEEB9.968e-2357.65Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]
GCSP_ANASP9.968e-2355.68Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_BDEBA1.700e-2255.29Glycine dehydrogenase [decarboxylating] OS=Bdellov... [more]
GCSP_LEPIN3.207e-2151.14Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_DICDI4.188e-2153.41Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_BORPD4.188e-2152.27Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_LEPIC1.219e-2050.00Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_FLAJ11.591e-2055.68Glycine dehydrogenase [decarboxylating] OS=Flavoba... [more]
GCSP_PROMM2.079e-2051.76Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_PROM32.079e-2051.76Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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