CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHEB8 (Glycine dehydrogenase [decarboxylating] OS=Shewanella baltica (strain OS185) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA++SIR E A++E+G+  + NN L  APH  + +M   + T+P SRE A  P++ +R  KFWP   R+D+VYGDRNL C  +P
Sbjct:  869 LDRFIDAMVSIRAEIAKVESGEWPVDNNPLHNAPHTMADIMDPEFDTRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLFCACVP 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHEB5 (Glycine dehydrogenase [decarboxylating] OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA++SIR E A++E+G+  + NN L  APH  + +M   + T+P SRE A  P++ +R  KFWP   R+D+VYGDRNL+C+  P
Sbjct:  869 LDRFIDAMVSIRAEIAKVESGEWPVDNNPLHNAPHTMADIMDPEFDTRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLMCSCAP 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHEB2 (Glycine dehydrogenase [decarboxylating] OS=Shewanella baltica (strain OS223) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA++SIR E A++E+G+  + NN L  APH  + +M   + T+P SRE A  P++ +R  KFWP   R+D+VYGDRNL+C+  P
Sbjct:  869 LDRFIDAMVSIRAEIAKVESGEWPVDNNPLHNAPHTMADIMDPEFDTRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLMCSCAP 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURTA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFVAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAYPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURPS (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURP6 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei (strain 668) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURP1 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei (strain 1710b) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURP0 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei (strain 1106a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  878 LDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 965          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURMS (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain SAVP1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURMA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_SHEB88.174e-1747.19Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHEB58.174e-1747.19Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHEB28.174e-1747.19Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_BURTA8.174e-1745.45Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURPS8.174e-1745.45Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURP68.174e-1745.45Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURP18.174e-1745.45Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURP08.174e-1745.45Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURMS8.174e-1745.45Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURMA8.174e-1745.45Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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