CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURM9 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain NCTC 10229) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURM7 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain NCTC 10247) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_XYLFT (Glycine dehydrogenase [decarboxylating] OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.067e-16
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I IR E A IE G  D  +N LK APH    +M   W    SRE AA P   L  AK+WP   RVDNVYGD++++C  +P
Sbjct:  883 LDRFVDAMIQIRGEIAAIEKGHLDPEDNPLKQAPHTAVQVMASQWGHAYSRELAAFPLGVLHHAKYWPPVARVDNVYGDKHVMCACIP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_XYLFA (Glycine dehydrogenase [decarboxylating] OS=Xylella fastidiosa GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.067e-16
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I IR E A IE G  D  +N LK APH    +M   W    SRE AA P   L  AK+WP   RVDNVYGD++++C  +P
Sbjct:  883 LDRFVDAMIQIRGEIAAIEKGHLDPEDNPLKQAPHTAVQVMASQWGHAYSRELAAFPLGVLHHAKYWPPVARVDNVYGDKHVMCACIP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PROMA (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.067e-16
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            ++R+C+A+ISIR E   IE+G  D+ NN L+ APH    +  + W +P +R+ AA P       KFWPA  R+DN +GDRNL+C+
Sbjct:  870 INRFCEAMISIRSEIDAIESGITDLSNNPLRLAPHTMETVTAEIWDRPYTRQQAAFPLKDQFMNKFWPAVSRIDNAFGDRNLVCS 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_AZOSE (Glycine dehydrogenase [decarboxylating] OS=Azoarcus sp. (strain EbN1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.067e-16
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLM---GDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR E  ++ENG     +N LK APH  +  +   G  W++P SRE A  P  W+   KFWP+  R+D+VYGDRNL C  +P
Sbjct:  876 LDRFIAAMITIRNEIREVENGAWPTDDNPLKNAPHTQADFIAADGAQWSRPYSREQAVFPLPWVAENKFWPSVNRIDDVYGDRNLFCACVP 966          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_TERTT (Glycine dehydrogenase [decarboxylating] OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gcvP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.394e-16
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I IREE  +IE G+    +N L  APH    +    W +  +R+ A  P  +L+  K WP   R+DNVYGDRNLIC+
Sbjct:  869 LDRFCDAMIQIREEIRKIEQGELPADDNPLVNAPHTLDDVCNSEWNRSYTRDQACRPLDYLKHHKVWPTVNRIDNVYGDRNLICS 953          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP2_COLP3 (Glycine dehydrogenase [decarboxylating] 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.394e-16
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LD++ DALI+IR E A++E G   + +N L  APH  + L G  W +  SR  A  P+S     KFWP T R+DNVYGDRNLIC+  P
Sbjct:  860 LDKFIDALITIRHEIAKVEEGTWTLADNPLVNAPHTLNDLTGSDWPRAYSRLTACYPSSCPSQPKFWPTTNRIDNVYGDRNLICSCPP 947          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRASO (Glycine dehydrogenase [decarboxylating] OS=Bradyrhizobium sp. (strain ORS278) GN=gcvP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.821e-16
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+I+IR+E A++E G+  I  + L+ APH    +  D W++   R     PA   R  K+W   GRVDNVYGDRNL+C+  P
Sbjct:  861 LDRFCDAMIAIRKEIAEVEQGRFTIEASPLRHAPHTVHDIADDEWSRAYRRSEGCFPAGSSRTDKYWCPVGRVDNVYGDRNLVCSCPP 948          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHESW (Glycine dehydrogenase [decarboxylating] OS=Shewanella sp. (strain W3-18-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA++SIR E A++E+G+    NN L  APH  + +M   + T+P SRE A  P++ +R  KFWP   R+D+VYGDRNL+C+  P
Sbjct:  869 LDRFIDAMVSIRAEIAKVESGEWPADNNPLHNAPHTMADIMDPEFDTRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLMCSCAP 957          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_BURM98.174e-1745.45Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURM78.174e-1745.45Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_XYLFT1.067e-1648.86Glycine dehydrogenase [decarboxylating] OS=Xylella... [more]
GCSP_XYLFA1.067e-1648.86Glycine dehydrogenase [decarboxylating] OS=Xylella... [more]
GCSP_PROMA1.067e-1644.71Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_AZOSE1.067e-1645.05Glycine dehydrogenase [decarboxylating] OS=Azoarcu... [more]
GCSP_TERTT1.394e-1645.88Glycine dehydrogenase [decarboxylating] OS=Teredin... [more]
GCSP2_COLP31.394e-1648.86Glycine dehydrogenase [decarboxylating] 2 OS=Colwe... [more]
GCSP_BRASO1.821e-1645.45Glycine dehydrogenase [decarboxylating] OS=Bradyrh... [more]
GCSP_SHESW2.378e-1647.19Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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