CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHEPC (Glycine dehydrogenase [decarboxylating] OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gcvP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA++SIR E A++E+G+    NN L  APH  + +M   + T+P SRE A  P++ +R  KFWP   R+D+VYGDRNL+C+  P
Sbjct:  869 LDRFIDAMVSIRAEIAKVESGEWPADNNPLHNAPHTMADIMDPEFDTRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLMCSCAP 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP2_PSEF5 (Glycine dehydrogenase [decarboxylating] 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A++SIR E AQ++ G     +N LKGAPH  + + G  W +  S E A  P +  R  K+WPA  RVDNVYGDRNL C  +P
Sbjct:  863 LDRFIEAMLSIRAEIAQVQEGNWPAEDNPLKGAPHTLADITG-VWERSYSIEQAVLPTAHTRAHKYWPAVNRVDNVYGDRNLFCACVP 949          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_MYCLE (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium leprae GN=gcvP PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +D +C+A+I+IR E A++  G+  + +N L+GAPH    L+   W  P +RE AA P       K WP   R+D VYGDRNL+C+ LP
Sbjct:  860 IDAFCEAMIAIRGEIARVGAGEWSVEDNPLRGAPHTAECLLASDWDHPYTREEAAYPLGKAFRPKVWPPVRRIDGVYGDRNLVCSCLP 947          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_MYCLB (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium leprae (strain Br4923) GN=gcvP PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +D +C+A+I+IR E A++  G+  + +N L+GAPH    L+   W  P +RE AA P       K WP   R+D VYGDRNL+C+ LP
Sbjct:  860 IDAFCEAMIAIRGEIARVGAGEWSVEDNPLRGAPHTAECLLASDWDHPYTREEAAYPLGKAFRPKVWPPVRRIDGVYGDRNLVCSCLP 947          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP2_PSEPK (Glycine dehydrogenase [decarboxylating] 2 OS=Pseudomonas putida (strain KT2440) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.056e-16
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A+++IR E  +++ G     NN LK APH  + ++G  W +P S E A  P++ +R  K+WPA  RVDNVYGDRNL C  +P
Sbjct:  866 LDRFVEAMLAIRAEIDEVQQGNWPAENNPLKHAPHTLADVLG-VWDRPYSLEQAVAPSAHVRQHKYWPAVNRVDNVYGDRNLFCACVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_DEIRA (Glycine dehydrogenase [decarboxylating] OS=Deinococcus radiodurans GN=gcvP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.919e-16
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E   +++G     ++ LK APH    LM   WT+  SRE  A P++  +  K+WPA  RVDNVYGDRN +C+  P
Sbjct:  855 LDRFVDAMLNIRREIQDVQDGTISAADSPLKHAPHTLKDLMDSEWTRAYSRETGAFPSAAQKAWKYWPAVNRVDNVYGDRNFVCSCPP 942          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHESM (Glycine dehydrogenase [decarboxylating] OS=Shewanella sp. (strain MR-4) GN=gcvP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.037e-16
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA++SIR E A++E G+    NN L  APH  + +M   + ++P SRE A  P++ +R  KFWP   R+D+VYGDRNL C  +P
Sbjct:  869 LDRFIDAMVSIRAEIAKVEAGEWPADNNPLHNAPHTMADIMDSAFDSRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLFCACVP 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHEON (Glycine dehydrogenase [decarboxylating] OS=Shewanella oneidensis GN=gcvP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.037e-16
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA++SIR E A++E G+    NN L  APH  + +M   + ++P SRE A  P++ +R  KFWP   R+D+VYGDRNL C  +P
Sbjct:  869 LDRFIDAMVSIRAEIAKVEAGEWPADNNPLHNAPHTMADIMDSAFDSRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLFCACVP 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRAJA (Glycine dehydrogenase [decarboxylating] OS=Bradyrhizobium japonicum GN=gcvP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.037e-16
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+I+IR+E  ++E G+  I  + L+ APH    +  D W +  SR     P    R  K+W   GRVDNVYGDRNL+C+  P
Sbjct:  859 LDRFCDAMIAIRKEIGEVEAGRFKIEASPLRHAPHTVHDIADDAWARAYSRAEGCFPDGVSRTDKYWSPVGRVDNVYGDRNLVCSCPP 946          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHESR (Glycine dehydrogenase [decarboxylating] OS=Shewanella sp. (strain MR-7) GN=gcvP PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.180e-15
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA++SIR E A++E G+    NN L  APH  + +M   + ++P SRE A  P++ +R  KFWP   R+D+VYGDRNL C  +P
Sbjct:  869 LDRFIDAMVSIRAEIAKVEAGEWPADNNPLHNAPHTMADIMDPAFDSRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLFCACVP 957          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_SHEPC2.378e-1647.19Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP2_PSEF52.378e-1647.73Glycine dehydrogenase [decarboxylating] 2 OS=Pseud... [more]
GCSP_MYCLE3.106e-1643.18Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCLB3.106e-1643.18Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP2_PSEPK4.056e-1645.45Glycine dehydrogenase [decarboxylating] 2 OS=Pseud... [more]
GCSP_DEIRA6.919e-1644.32Glycine dehydrogenase [decarboxylating] OS=Deinoco... [more]
GCSP_SHESM9.037e-1646.07Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHEON9.037e-1646.07Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_BRAJA9.037e-1644.32Glycine dehydrogenase [decarboxylating] OS=Bradyrh... [more]
GCSP_SHESR1.180e-1546.07Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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