CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP2_PSEPF (Glycine dehydrogenase [decarboxylating] 2 OS=Pseudomonas fluorescens (strain Pf0-1) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A++SIR E  +++NG     +N LK APH  + + G  W +P S E    P +  +  K+WPA  RVDNVYGDRNL C  +P
Sbjct:  866 LDRFIGAMLSIRAEITEVQNGNWPAEDNPLKRAPHTMADITG-VWERPYSIEQGITPDAHTKAHKYWPAVNRVDNVYGDRNLFCACVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YERPY (Glycine dehydrogenase [decarboxylating] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+G+ WT P SRE A  P + +   K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIEKVAQGEWPLEDNPLVNAPHTQAELVGE-WTHPYSRELAVFPVAGVLENKYWPTVKRLDDVYGDRNLFCSCVP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YERPS (Glycine dehydrogenase [decarboxylating] OS=Yersinia pseudotuberculosis GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+G+ WT P SRE A  P + +   K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIEKVAQGEWPLEDNPLVNAPHTQAELVGE-WTHPYSRELAVFPVAGVLENKYWPTVKRLDDVYGDRNLFCSCVP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YERPP (Glycine dehydrogenase [decarboxylating] OS=Yersinia pestis (strain Pestoides F) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+G+ WT P SRE A  P + +   K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIEKVAQGEWPLEDNPLVNAPHTQAELVGE-WTHPYSRELAVFPVAGVLENKYWPTVKRLDDVYGDRNLFCSCVP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YERPN (Glycine dehydrogenase [decarboxylating] OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+G+ WT P SRE A  P + +   K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIEKVAQGEWPLEDNPLVNAPHTQAELVGE-WTHPYSRELAVFPVAGVLENKYWPTVKRLDDVYGDRNLFCSCVP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YERPG (Glycine dehydrogenase [decarboxylating] OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+G+ WT P SRE A  P + +   K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIEKVAQGEWPLEDNPLVNAPHTQAELVGE-WTHPYSRELAVFPVAGVLENKYWPTVKRLDDVYGDRNLFCSCVP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YERPE (Glycine dehydrogenase [decarboxylating] OS=Yersinia pestis GN=gcvP PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+G+ WT P SRE A  P + +   K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIEKVAQGEWPLEDNPLVNAPHTQAELVGE-WTHPYSRELAVFPVAGVLENKYWPTVKRLDDVYGDRNLFCSCVP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YERPB (Glycine dehydrogenase [decarboxylating] OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+G+ WT P SRE A  P + +   K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIEKVAQGEWPLEDNPLVNAPHTQAELVGE-WTHPYSRELAVFPVAGVLENKYWPTVKRLDDVYGDRNLFCSCVP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YERPA (Glycine dehydrogenase [decarboxylating] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+G+ WT P SRE A  P + +   K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIEKVAQGEWPLEDNPLVNAPHTQAELVGE-WTHPYSRELAVFPVAGVLENKYWPTVKRLDDVYGDRNLFCSCVP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YERP3 (Glycine dehydrogenase [decarboxylating] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+G+ WT P SRE A  P + +   K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIEKVAQGEWPLEDNPLVNAPHTQAELVGE-WTHPYSRELAVFPVAGVLENKYWPTVKRLDDVYGDRNLFCSCVP 954          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP2_PSEPF7.650e-1544.32Glycine dehydrogenase [decarboxylating] 2 OS=Pseud... [more]
GCSP_YERPY9.991e-1543.18Glycine dehydrogenase [decarboxylating] OS=Yersini... [more]
GCSP_YERPS9.991e-1543.18Glycine dehydrogenase [decarboxylating] OS=Yersini... [more]
GCSP_YERPP9.991e-1543.18Glycine dehydrogenase [decarboxylating] OS=Yersini... [more]
GCSP_YERPN9.991e-1543.18Glycine dehydrogenase [decarboxylating] OS=Yersini... [more]
GCSP_YERPG9.991e-1543.18Glycine dehydrogenase [decarboxylating] OS=Yersini... [more]
GCSP_YERPE9.991e-1543.18Glycine dehydrogenase [decarboxylating] OS=Yersini... [more]
GCSP_YERPB9.991e-1543.18Glycine dehydrogenase [decarboxylating] OS=Yersini... [more]
GCSP_YERPA9.991e-1543.18Glycine dehydrogenase [decarboxylating] OS=Yersini... [more]
GCSP_YERP39.991e-1543.18Glycine dehydrogenase [decarboxylating] OS=Yersini... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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