CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHEFN (Glycine dehydrogenase [decarboxylating] OS=Shewanella frigidimarina (strain NCIMB 400) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 39/89 (43.82%), Postives = 59/89 (66.29%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A+ISIR E  ++E G+  + NN L  APH  + +M   + ++P SRE A  P + ++  KFWP   R+D+VYGDRNL+C+ +P
Sbjct:  869 LDRFIEAMISIRGEITKVEAGEWPVDNNPLHNAPHTLADIMDPEFDSRPYSREVAVFPTAAVKANKFWPTVNRIDDVYGDRNLMCSCVP 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHELP (Glycine dehydrogenase [decarboxylating] OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A+++IR E A++E G+    NN L  APH  + +M   + ++P SRE A  P + ++  KFWP   R+D+VYGDRNL+C+  P
Sbjct:  869 LDRFIEAMVAIRGEIAKVEAGEWPADNNPLHNAPHTMADIMDSEFDSRPYSRETAVFPTAAVKANKFWPTVNRIDDVYGDRNLMCSCAP 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_MYCTU (Probable glycine dehydrogenase [decarboxylating] OS=Mycobacterium tuberculosis GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +D +C+A+I IR E  ++  G+  + +N L+GAPH    L+   W  P +RE AA P       K WPA  R+D  YGDRNL+C+  P
Sbjct:  849 VDAFCEAMIGIRAEIDKVGAGEWPVDDNPLRGAPHTAQCLLASDWDHPYTREQAAYPLGTAFRPKVWPAVRRIDGAYGDRNLVCSCPP 936          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_MYCTA (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +D +C+A+I IR E  ++  G+  + +N L+GAPH    L+   W  P +RE AA P       K WPA  R+D  YGDRNL+C+  P
Sbjct:  849 VDAFCEAMIGIRAEIDKVGAGEWPVDDNPLRGAPHTAQCLLASDWDHPYTREQAAYPLGTAFRPKVWPAVRRIDGAYGDRNLVCSCPP 936          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_MYCBT (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +D +C+A+I IR E  ++  G+  + +N L+GAPH    L+   W  P +RE AA P       K WPA  R+D  YGDRNL+C+  P
Sbjct:  849 VDAFCEAMIGIRAEIDKVGAGEWPVDDNPLRGAPHTAQCLLASDWDHPYTREQAAYPLGTAFRPKVWPAVRRIDGAYGDRNLVCSCPP 936          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_MYCBP (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +D +C+A+I IR E  ++  G+  + +N L+GAPH    L+   W  P +RE AA P       K WPA  R+D  YGDRNL+C+  P
Sbjct:  849 VDAFCEAMIGIRAEIDKVGAGEWPVDDNPLRGAPHTAQCLLASDWDHPYTREQAAYPLGTAFRPKVWPAVRRIDGAYGDRNLVCSCPP 936          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_MYCBO (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium bovis GN=gcvP PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +D +C+A+I IR E  ++  G+  + +N L+GAPH    L+   W  P +RE AA P       K WPA  R+D  YGDRNL+C+  P
Sbjct:  849 VDAFCEAMIGIRAEIDKVGAGEWPVDDNPLRGAPHTAQCLLASDWDHPYTREQAAYPLGTAFRPKVWPAVRRIDGAYGDRNLVCSCPP 936          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PSYCK (Glycine dehydrogenase [decarboxylating] OS=Psychrobacter cryohalolentis (strain K5) GN=gcvP PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKAD--IHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+  AL SI+ E  + + G+ +  + NN L  APH  ++++   WT P SRE AA P  ++R  KFWP+  RVD+ YGD+NL+C+
Sbjct:  871 LDRFISALKSIKAEALKAKAGEDNWTLENNPLVNAPHTAAMVIDGEWTYPYSRETAAFPLPYIRTNKFWPSVARVDDAYGDKNLMCS 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PSYA2 (Glycine dehydrogenase [decarboxylating] OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=gcvP PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKAD--IHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+  AL SI+ E  + + G+ +  + NN L  APH  ++++   WT P SRE AA P  ++R  KFWP+  RVD+ YGD+NL+C+
Sbjct:  871 LDRFISALKSIKAEAMKAKAGEDNWTLENNPLVNAPHTAAMVIDGEWTYPYSRETAAFPLPYIRTNKFWPSVARVDDAYGDKNLMCS 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHESH (Glycine dehydrogenase [decarboxylating] OS=Shewanella sediminis (strain HAW-EB3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A+ISIR E +++E+G+    NN L  APH  + +M   + ++P SRE A  P + ++  KFWP   R+D+V+GDRNL C  +P
Sbjct:  869 LDRFIEAMISIRGEASRVESGEWPADNNPLHNAPHTLADIMDPEFDSRPYSREVAVFPTAAVKLNKFWPTVNRIDDVFGDRNLFCACVP 957          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_SHEFN9.991e-1543.82Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_SHELP1.305e-1442.70Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]
GCSP_MYCTU1.305e-1440.91Probable glycine dehydrogenase [decarboxylating] O... [more]
GCSP_MYCTA1.305e-1440.91Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCBT1.305e-1440.91Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCBP1.305e-1440.91Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCBO1.305e-1440.91Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_PSYCK1.704e-1443.68Glycine dehydrogenase [decarboxylating] OS=Psychro... [more]
GCSP_PSYA21.704e-1443.68Glycine dehydrogenase [decarboxylating] OS=Psychro... [more]
GCSP_SHESH2.226e-1442.70Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
back to top