CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP2_PSEAE (Glycine dehydrogenase [decarboxylating] 2 OS=Pseudomonas aeruginosa GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A++SIR E  ++E+G     +N LK APH  + + G  W +P     A  P+   R  K+WPA  RVDNVYGDRNL C  +P
Sbjct:  866 LDRFVEAMLSIRAEIGKVESGAWPAEDNPLKRAPHTLADVTG-IWQRPYEIAEAVTPSEHARAFKYWPAVNRVDNVYGDRNLFCACVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YERE8 (Glycine dehydrogenase [decarboxylating] OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvP PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14
Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+G+ W  P SRE A  P + +   K+WP+  R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIEKVARGEWPLEDNPLVNAPHTQAELVGE-WQHPYSRELAVFPVAGVMENKYWPSVKRLDDVYGDRNLFCSCVP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_YEAST (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Saccharomyces cerevisiae GN=GCV2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHP-PSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+ISI+EE   +  G+      +LK APH    L+    W T+  +RE AA P  +LR+ KFWP   R+D+ YGD NLICT
Sbjct:  938 LDRFCDAMISIKEEINALVAGQPK--GQILKNAPHSLEDLITSSNWDTRGYTREEAAYPLPFLRYNKFWPTVARLDDTYGDMNLICT 1022          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_GLUOX (Glycine dehydrogenase [decarboxylating] OS=Gluconobacter oxydans GN=gcvP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I+IR E A++E G+  + ++ L+ APH  + L GD W +  SRE    P   +  AK+W   GR+DN +GDRNL+C+
Sbjct:  859 LDRFCDAMIAIRAEIAEVEAGRVGMEDSPLRFAPHTTADLAGD-WERSYSREAGCFPGG-VDTAKYWSPVGRLDNAWGDRNLVCS 941          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_MYCPA (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium paratuberculosis GN=gcvP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +D +CDA+I+IR E  ++  G+  + +N L+GAPH    L+   W  P SRE AA P       K WP   R+D  YGDRNL+C+  P
Sbjct:  849 VDAFCDAMIAIRGEIDRVGAGEWPVEDNPLRGAPHTAECLVTTDWDHPYSREQAAYPLGKDFRPKVWPPVRRIDGAYGDRNLVCSCPP 936          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_MYCA1 (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium avium (strain 104) GN=gcvP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +D +CDA+I+IR E  ++  G+  + +N L+GAPH    L+   W  P SRE AA P       K WP   R+D  YGDRNL+C+  P
Sbjct:  849 VDAFCDAMIAIRGEIDRVGAGEWPVEDNPLRGAPHTAECLVTTDWDHPYSREQAAYPLGKDFRPKVWPPVRRIDGAYGDRNLVCSCPP 936          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHILO (Glycine dehydrogenase [decarboxylating] OS=Rhizobium loti GN=gcvP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.476e-14
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWL-RFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A+I+I  E A++  G   + +N L  APH  +  +   WT P SR  AA PA      AK+WP   R+DNV GDRNL+C+  P
Sbjct:  840 LDRFCEAMIAIAGEAAKVARGDWPLADNPLVNAPHTAAETLAGQWTHPYSRLEAAYPAGDADTAAKYWPPVSRIDNVAGDRNLVCSCPP 928          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_NEIMF (Glycine dehydrogenase [decarboxylating] OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  AL  I++E  ++  G+    +N L  APH  S + G+ W  P SRE A  P  ++R  KFWP+  RVD+VYGDRNL+C+  P
Sbjct:  858 LDRFIAALKQIKQEVLKVGRGEWPKEDNPLVNAPHTASDVTGE-WAHPYSREEAVFPLPFVREHKFWPSVNRVDDVYGDRNLVCSCPP 944          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_NEIM0 (Glycine dehydrogenase [decarboxylating] OS=Neisseria meningitidis serogroup C (strain 053442) GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  AL  I++E  ++  G+    +N L  APH  S + G+ W  P SRE A  P  ++R  KFWP+  RVD+VYGDRNL+C+  P
Sbjct:  858 LDRFIAALKQIKQEVLKVGRGEWPKEDNPLVNAPHTASDVTGE-WAHPYSREEAVFPLPFVREHKFWPSVNRVDDVYGDRNLVCSCPP 944          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BARHE (Glycine dehydrogenase [decarboxylating] OS=Bartonella henselae GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFA-KFWPATGRVDNVYGDRNLICTLLP 265
            +DR+CDAL+SI EE  +I +G     +N L  APH     + DTW +P SR+ AA P   L  A K+WP   R+DNV GDR LIC+  P
Sbjct:  838 IDRFCDALLSIAEEAKKIGSGVWPKDDNPLVHAPHTLVDTLDDTWARPYSRQEAAFPNCSLDPANKYWPPVSRIDNVAGDRMLICSCPP 926          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP2_PSEAE2.226e-1444.32Glycine dehydrogenase [decarboxylating] 2 OS=Pseud... [more]
GCSP_YERE82.907e-1442.05Glycine dehydrogenase [decarboxylating] OS=Yersini... [more]
GCSP_YEAST3.797e-1447.13Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_GLUOX3.797e-1444.71Glycine dehydrogenase [decarboxylating] OS=Glucono... [more]
GCSP_MYCPA4.959e-1442.05Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCA14.959e-1442.05Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_RHILO6.476e-1443.82Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_NEIMF8.458e-1444.32Glycine dehydrogenase [decarboxylating] OS=Neisser... [more]
GCSP_NEIM08.458e-1444.32Glycine dehydrogenase [decarboxylating] OS=Neisser... [more]
GCSP_BARHE8.458e-1447.19Glycine dehydrogenase [decarboxylating] OS=Bartone... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
back to top