CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_STRCO (Glycine dehydrogenase [decarboxylating] OS=Streptomyces coelicolor GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A+I+IR E  ++ +G     +N L+GAPH    L G+ W    +RE A  PA      K+WP   R+D  YGDRNL+C+  P
Sbjct:  869 LDRFCEAMIAIRAEIEKVGSGAWPADDNPLRGAPHTADALGGE-WDHAYTREEAVFPAGVSAADKYWPPVRRIDQAYGDRNLVCSCPP 955          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_NEIG2 (Glycine dehydrogenase [decarboxylating] OS=Neisseria gonorrhoeae (strain NCCP11945) GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  AL SIR E  ++ +G+    +N L  APH  + + G+ W  P SRE A  P  ++R  KFWP   RVD+VYGDRNL+C+  P
Sbjct:  858 LDRFIAALKSIRREVQKVIDGEWPKDDNPLVNAPHTAADITGE-WAHPYSREEAVFPLPFVREHKFWPFVNRVDDVYGDRNLVCSCPP 944          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_NEIG1 (Glycine dehydrogenase [decarboxylating] OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  AL SIR E  ++ +G+    +N L  APH  + + G+ W  P SRE A  P  ++R  KFWP   RVD+VYGDRNL+C+  P
Sbjct:  858 LDRFIAALKSIRREVQKVIDGEWPKDDNPLVNAPHTAADITGE-WAHPYSREEAVFPLPFVREHKFWPFVNRVDDVYGDRNLVCSCPP 944          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_STRGG (Glycine dehydrogenase [decarboxylating] OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=gcvP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CD +I+IR E  ++ +G+    +N L  APH  + L GD W    SRE A  PA      K+WP   R+D  +GDRNL+C+  P
Sbjct:  869 LDRFCDTMIAIRAEIEKVASGEWSADDNPLSNAPHTAAALGGD-WEHGYSREEAVFPAGVSAADKYWPPVRRIDGAFGDRNLVCSCPP 955          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SERP5 (Glycine dehydrogenase [decarboxylating] OS=Serratia proteamaculans (strain 568) GN=gcvP PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  ++  G+  + +N L  APH  + L+ D W    SRE A  P + +R  K+WP+  R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRSEIDRVAKGEWPLEDNPLVNAPHIQAELVSD-WQHAYSRELAVFPIAGVRENKYWPSVKRLDDVYGDRNLFCSCVP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_STRAW (Glycine dehydrogenase [decarboxylating] OS=Streptomyces avermitilis GN=gcvP PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A+I+IR E  ++ +G+    +N L+ APH  + L G+ W    SRE A  PA      K+WP   R+D  +GDRNL+C+  P
Sbjct:  869 LDRFCEAMIAIRAEVEKVGSGEWPAEDNPLRNAPHTAAALGGE-WEHAYSREEAVFPAGVSAADKYWPPVRRIDQAFGDRNLVCSCPP 955          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PSEHT (Glycine dehydrogenase [decarboxylating] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=gcvP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR+ +A++SI+ E  ++ +G+  I NN L  APH    ++G+ W +   R  AA P   +   KFWP   R+D+VYGDRNL+C   P
Sbjct:  870 IDRFIEAMVSIKSEIDKVISGEWSIENNPLVFAPHTQGDVLGNEWDRAYDRFYAAFPVPSVAKNKFWPTVTRIDDVYGDRNLVCACPP 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHOSK (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=gcvP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR+  AL++IREE   +E G+    ++ L+ APH    L+ D W +   RE    P    R  K+WP  GRVDN +GDRNL+CT  P
Sbjct:  861 IDRFVAALLAIREEIRAVEEGEIAAADSPLRHAPHTVEDLVAD-WDRKYPREQGCFPPGSFRVDKYWPPVGRVDNAWGDRNLVCTCPP 947          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHOS4 (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gcvP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR+  AL++IREE   +E G+    ++ L+ APH    L+ D W +   RE    P    R  K+WP  GRVDN +GDRNL+CT  P
Sbjct:  861 IDRFVAALLAIREEIRAVEEGEIAAADSPLRHAPHTVEDLVAD-WDRKYPREQGCFPPGSFRVDKYWPPVGRVDNAWGDRNLVCTCPP 947          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHOS1 (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=gcvP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR+  AL++IREE   +E G+    ++ L+ APH    L+ D W +   RE    P    R  K+WP  GRVDN +GDRNL+CT  P
Sbjct:  861 IDRFVAALLAIREEIRAVEEGEIAAGDSPLRHAPHTVEDLVAD-WDRKYPREQGCFPPGSFRVDKYWPPVGRVDNAWGDRNLVCTCPP 947          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_STRCO1.105e-1342.05Glycine dehydrogenase [decarboxylating] OS=Strepto... [more]
GCSP_NEIG21.105e-1345.45Glycine dehydrogenase [decarboxylating] OS=Neisser... [more]
GCSP_NEIG11.105e-1345.45Glycine dehydrogenase [decarboxylating] OS=Neisser... [more]
GCSP_STRGG1.443e-1342.05Glycine dehydrogenase [decarboxylating] OS=Strepto... [more]
GCSP_SERP51.884e-1342.05Glycine dehydrogenase [decarboxylating] OS=Serrati... [more]
GCSP_STRAW2.461e-1340.91Glycine dehydrogenase [decarboxylating] OS=Strepto... [more]
GCSP_PSEHT2.461e-1339.77Glycine dehydrogenase [decarboxylating] OS=Pseudoa... [more]
GCSP_RHOSK3.214e-1342.05Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]
GCSP_RHOS43.214e-1342.05Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]
GCSP_RHOS13.214e-1342.05Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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