CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHIDS (Glycine dehydrogenase [decarboxylating] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952
[Close]
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHIB3 (Glycine dehydrogenase [decarboxylating] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952
[Close]
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SALTY (Glycine dehydrogenase [decarboxylating] OS=Salmonella typhimurium GN=gcvP PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952
[Close]
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SALTI (Glycine dehydrogenase [decarboxylating] OS=Salmonella typhi GN=gcvP PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952
[Close]
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SALPC (Glycine dehydrogenase [decarboxylating] OS=Salmonella paratyphi C (strain RKS4594) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952
[Close]
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SALPB (Glycine dehydrogenase [decarboxylating] OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952
[Close]
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SALHS (Glycine dehydrogenase [decarboxylating] OS=Salmonella heidelberg (strain SL476) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952
[Close]
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SALG2 (Glycine dehydrogenase [decarboxylating] OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952
[Close]
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SALEP (Glycine dehydrogenase [decarboxylating] OS=Salmonella enteritidis PT4 (strain P125109) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952
[Close]
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SALDC (Glycine dehydrogenase [decarboxylating] OS=Salmonella dublin (strain CT_02021853) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_SHIDS1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Shigell... [more]
GCSP_SHIB31.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Shigell... [more]
GCSP_SALTY1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SALTI1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SALPC1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SALPB1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SALHS1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SALG21.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SALEP1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SALDC1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
back to top