CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHIME (Glycine dehydrogenase [decarboxylating] OS=Rhizobium meliloti GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+++IREE   IE+G+ D  NN LK APH    L+GD W +P SRE A  P    R  K+W    RVDNVYGDRNL+CT  P
Sbjct:  859 LDRFCDAMLAIREEARAIEDGRMDKVNNPLKNAPHTVEDLVGD-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLVCTCPP 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_AGRT5 (Glycine dehydrogenase [decarboxylating] OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR+CDA+++IREE   IE G+AD +NN LK APH    L+G+ W +P SRE    P    R  K+W    R+DNVYGDRNLICT  P
Sbjct:  859 IDRFCDAMLAIREEARDIEEGRADKNNNPLKNAPHTVEDLVGE-WDRPYSREKGCFPPGAFRIDKYWSPVNRIDNVYGDRNLICTCPP 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEPF (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20
Identity = 47/84 (55.95%), Postives = 58/84 (69.05%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLIC 253
            LDR+CDA+I IREE   +ENG  D  +N LK APH  + L+G+ WT P SRE A  P + L   K+WP  GRVDNV+GDRNL+C
Sbjct:  859 LDRFCDAMIRIREEIRAVENGTLDKDDNPLKNAPHTAAELVGE-WTHPYSREQAVYPVASLIEGKYWPPVGRVDNVFGDRNLVC 941          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_VIBFM (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain MJ11) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I+IREE  ++E G+  + NN L  APH    LM D+W  P +RE A  P+S  + +K+WP   RVDNVYGDRNLIC+
Sbjct:  862 LDRFCDAMIAIREEMHKVEQGEWPLDNNPLVNAPHTQVDLMSDSWDHPYTREVACFPSSQSKDSKYWPTVNRVDNVYGDRNLICS 946          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_VIBF1 (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I+IREE  ++E G+  + NN L  APH    LM D+W  P +RE A  P+S  + +K+WP   RVDNVYGDRNLIC+
Sbjct:  862 LDRFCDAMIAIREEMNKVEQGEWPLDNNPLVNAPHTQVDLMSDSWEHPYTREVACFPSSQSKDSKYWPTVNRVDNVYGDRNLICS 946          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BORA1 (Glycine dehydrogenase [decarboxylating] OS=Bordetella avium (strain 197N) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            L+R+ DA+I+IR E AQ+E G+ D  +NVLK APH   +L+ + W     R+ AA P + LR  K+WP   RVDN YGDRNL+C+ LP
Sbjct:  863 LERFIDAMIAIRAEVAQVERGERDREDNVLKNAPHTAQMLLAEEWHHAYPRQQAAYPLASLRDGKYWPPVARVDNAYGDRNLVCSCLP 950          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PSEFS (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas fluorescens (strain SBW25) GN=gcvP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLIC 253
            LDR+CDA+I+IREE   +ENG  D  +N LK APH  + L+G+ W+ P SRE A  P + L   K+WP  GRVDNV+GDRNL+C
Sbjct:  855 LDRFCDAMIAIREEIRAVENGTLDKDDNPLKNAPHTAAELVGE-WSHPYSREQAVYPVASLIEGKYWPPVGRVDNVFGDRNLVC 937          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_LEPBL (Glycine dehydrogenase [decarboxylating] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gcvP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A++ I +E   ++NG  D  +N LK +PH  ++   D W     +E AA PA W R  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  872 LDRFCEAMLLIHQEILDVQNGTLDKIDNPLKNSPHTAAMTTSDRWDHLYPKERAAYPAPWSRDHKFWPFVGRVDNVYGDRNLVCSCLP 959          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_LEPBJ (Glycine dehydrogenase [decarboxylating] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A++ I +E   ++NG  D  +N LK +PH  ++   D W     +E AA PA W R  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  872 LDRFCEAMLLIHQEILDVQNGTLDKIDNPLKNSPHTAAMTTSDRWDHLYPKERAAYPAPWSRDHKFWPFVGRVDNVYGDRNLVCSCLP 959          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RALME (Glycine dehydrogenase [decarboxylating] OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gcvP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I+IR E A++E+G  D  +N LK APH  ++++ D W    +RE AA P + LR  K+WP  GR DNVYGDRNL C+ +P
Sbjct:  880 LDRFIDAMIAIRGEIARVEDGSFDREDNPLKHAPHTAAVVVSDKWNHKYTREEAAYPVASLRTQKYWPPVGRADNVYGDRNLFCSCVP 967          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_RHIME3.545e-2054.55Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_AGRT53.545e-2052.27Glycine dehydrogenase [decarboxylating] OS=Agrobac... [more]
GCSP1_PSEPF4.630e-2055.95Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_VIBFM6.048e-2052.94Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_VIBF16.048e-2052.94Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_BORA16.048e-2050.00Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_PSEFS7.898e-2054.76Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_LEPBL7.898e-2048.86Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPBJ7.898e-2048.86Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_RALME1.032e-1950.00Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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