CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECODH (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain K12 / DH10B) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECOBW (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain K12 / BW2952) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECO81 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O81 (strain ED1a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECO5E (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECO57 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O157:H7 GN=gcvP PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECO45 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECO27 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRUSU (Glycine dehydrogenase [decarboxylating] OS=Brucella suis GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*P-ASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR CDA+I+I  E  ++ +G     +N L  APH  S  +   W  P +RE A  P  ++   AK+WP   RVDNV GDRNLIC+  P
Sbjct:  839 IDRLCDAMIAIAGEAKKVADGVWPADDNPLANAPHTASDTLATEWKHPYTREEAVFPGGAFDPTAKYWPPVSRVDNVGGDRNLICSCPP 927          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRUSI (Glycine dehydrogenase [decarboxylating] OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*P-ASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR CDA+I+I  E  ++ +G     +N L  APH  S  +   W  P +RE A  P  ++   AK+WP   RVDNV GDRNLIC+  P
Sbjct:  839 IDRLCDAMIAIAGEAKKVADGVWPADDNPLANAPHTASDTLATEWKHPYTREEAVFPGGAFDPTAKYWPPVSRVDNVGGDRNLICSCPP 927          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRUME (Glycine dehydrogenase [decarboxylating] OS=Brucella melitensis GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*P-ASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR CDA+I+I  E  ++ +G     +N L  APH  S  +   W  P +RE A  P  ++   AK+WP   RVDNV GDRNLIC+  P
Sbjct:  839 IDRLCDAMIAIAGEAKKVADGVWPADDNPLANAPHTASDTLATEWKHPYTREEAVFPGGAFDPTAKYWPPVSRVDNVGGDRNLICSCPP 927          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_ECODH1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOBW1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO811.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO5E1.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO571.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO451.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO271.221e-1244.32Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_BRUSU1.595e-1242.70Glycine dehydrogenase [decarboxylating] OS=Brucell... [more]
GCSP_BRUSI1.595e-1242.70Glycine dehydrogenase [decarboxylating] OS=Brucell... [more]
GCSP_BRUME1.595e-1242.70Glycine dehydrogenase [decarboxylating] OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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