CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRUMB (Glycine dehydrogenase [decarboxylating] OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*P-ASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR CDA+I+I  E  ++ +G     +N L  APH  S  +   W  P +RE A  P  ++   AK+WP   RVDNV GDRNLIC+  P
Sbjct:  839 IDRLCDAMIAIAGEAKKVADGVWPADDNPLANAPHTASDTLATEWKHPYTREEAVFPGGAFDPTAKYWPPVSRVDNVGGDRNLICSCPP 927          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRUC2 (Glycine dehydrogenase [decarboxylating] OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*P-ASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR CDA+I+I  E  ++ +G     +N L  APH  S  +   W  P +RE A  P  ++   AK+WP   RVDNV GDRNLIC+  P
Sbjct:  839 IDRLCDAMIAIAGEAKKVADGVWPADDNPLANAPHTASDTLATEWKHPYTREEAVFPGGAFDPTAKYWPPVSRVDNVGGDRNLICSCPP 927          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRUAB (Glycine dehydrogenase [decarboxylating] OS=Brucella abortus GN=gcvP PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*P-ASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR CDA+I+I  E  ++ +G     +N L  APH  S  +   W  P +RE A  P  ++   AK+WP   RVDNV GDRNLIC+  P
Sbjct:  839 IDRLCDAMIAIAGEAKKVADGVWPADDNPLANAPHTASDTLATEWKHPYTREEAVFPGGAFDPTAKYWPPVSRVDNVGGDRNLICSCPP 927          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRUA2 (Glycine dehydrogenase [decarboxylating] OS=Brucella abortus (strain 2308) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*P-ASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR CDA+I+I  E  ++ +G     +N L  APH  S  +   W  P +RE A  P  ++   AK+WP   RVDNV GDRNLIC+  P
Sbjct:  839 IDRLCDAMIAIAGEAKKVADGVWPADDNPLANAPHTASDTLATEWKHPYTREEAVFPGGAFDPTAKYWPPVSRVDNVGGDRNLICSCPP 927          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRUA1 (Glycine dehydrogenase [decarboxylating] OS=Brucella abortus (strain S19) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*P-ASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR CDA+I+I  E  ++ +G     +N L  APH  S  +   W  P +RE A  P  ++   AK+WP   RVDNV GDRNLIC+  P
Sbjct:  839 IDRLCDAMIAIAGEAKKVADGVWPADDNPLANAPHTASDTLATEWKHPYTREEAVFPGGAFDPTAKYWPPVSRVDNVGGDRNLICSCPP 927          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP1_COLP3 (Glycine dehydrogenase [decarboxylating] 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A++ IR+E  ++E+G+    NN L  APH  + +  + W +P S + A  P   +   KFWP   R+D+V+GDRNLIC+  P
Sbjct:  873 LDRFIEAMVCIRDEVRKVESGEWASDNNPLHNAPHTLADIT-EPWDRPYSIQEAVFPVVAVTANKFWPTVNRIDDVFGDRNLICSCPP 959          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_NOCFA (Glycine dehydrogenase [decarboxylating] OS=Nocardia farcinica GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRF-AKFWPATGRVDNVYGDRNLICTLLP 265
            LD +  A+I+IR E  Q+  G     +N L+GAPH    L+G+ WT P SRE A  P       AK WPA  R+D  YGDRNL+C+  P
Sbjct:  841 LDEFVAAMIAIRAEIDQVGAGVWPAEDNPLRGAPHTAECLVGE-WTHPYSREIAVYPRGLGHARAKVWPAVRRIDGAYGDRNLVCSCPP 928          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_KLEP3 (Glycine dehydrogenase [decarboxylating] OS=Klebsiella pneumoniae (strain 342) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  +++ G+  + +N L  APH    L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDRVKAGEWPLEDNPLVNAPHTQGELVSE-WNHPYSRELAVFPAGLHN--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHOS5 (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR+  AL++IREE   +E G+    ++ L+ APH    L+ D W +   RE    P    R  K+WP  GRVDN +GDRNL+C   P
Sbjct:  861 IDRFITALLAIREEIRAVEAGEIAAADSPLRHAPHTVEDLVAD-WDRNYPREQGCFPPGAFRVDKYWPPVGRVDNAWGDRNLVCICPP 947          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ESCF3 (Glycine dehydrogenase [decarboxylating] OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  + L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQNELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_BRUMB1.595e-1242.70Glycine dehydrogenase [decarboxylating] OS=Brucell... [more]
GCSP_BRUC21.595e-1242.70Glycine dehydrogenase [decarboxylating] OS=Brucell... [more]
GCSP_BRUAB1.595e-1242.70Glycine dehydrogenase [decarboxylating] OS=Brucell... [more]
GCSP_BRUA21.595e-1242.70Glycine dehydrogenase [decarboxylating] OS=Brucell... [more]
GCSP_BRUA11.595e-1242.70Glycine dehydrogenase [decarboxylating] OS=Brucell... [more]
GCSP1_COLP31.595e-1239.77Glycine dehydrogenase [decarboxylating] 1 OS=Colwe... [more]
GCSP_NOCFA2.083e-1244.94Glycine dehydrogenase [decarboxylating] OS=Nocardi... [more]
GCSP_KLEP32.083e-1242.05Glycine dehydrogenase [decarboxylating] OS=Klebsie... [more]
GCSP_RHOS52.721e-1240.91Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]
GCSP_ESCF32.721e-1243.18Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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