CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_EDWI9 (Glycine dehydrogenase [decarboxylating] OS=Edwardsiella ictaluri (strain 93-146) GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+++I +E  ++E G+  + +N L  APH    L+G+ W  P  RE A  P    R  K+WPA  R+D+VYGDR+L C+  P
Sbjct:  869 LDRFIAAMLAIHDEITRVETGEWPLQDNPLVNAPHTQRELVGE-WHHPYGRELAVFPTPQTRENKYWPAVKRLDDVYGDRHLQCSCPP 955          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECOSE (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain SE11) GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  + L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQNELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECOHS (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O9:H4 (strain HS) GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  + L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQNELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECO8A (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O8 (strain IAI1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  + L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQNELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECO55 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain 55989 / EAEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  + L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQNELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ECO24 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  + L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQNELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BACTN (Glycine dehydrogenase [decarboxylating] OS=Bacteroides thetaiotaomicron GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LD + D +++I +E  +++N +AD ++NVL  APHP   ++ D W    +RE AA P   +R  KFW    RVDN  GDR L+ T
Sbjct:  859 LDNFVDVMLNIWKEIQEVKNEEADKNDNVLINAPHPEYEIVNDNWEHSYTREKAAYPIESVRENKFWVNVARVDNTLGDRKLLPT 943          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BARQU (Glycine dehydrogenase [decarboxylating] OS=Bartonella quintana GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWL-RFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR+CDAL+SI EE  ++  G     +N L  APH     + D W  P SR+ AA P   L    K+WP   R+DNV GDR LIC+  P
Sbjct:  838 IDRFCDALLSIAEEAKKVGAGVWPKDDNPLVNAPHTLVDTLDDAWVHPYSRQEAAFPNHHLDPTNKYWPPVSRIDNVAGDRVLICSCPP 926          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SODGM (Glycine dehydrogenase [decarboxylating] OS=Sodalis glossinidius (strain morsitans) GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q+ +G     +N L  AP+    L G+ W  P  R+ AA PA +    K+WPA  R+D+VYGDRNL C  +P
Sbjct:  865 LDRFIDAMLAIRAEIQQVADGVWPASDNPLVNAPYTQRELAGE-WRHPYDRQIAAFPAGY--GDKYWPAVKRLDDVYGDRNLFCACVP 949          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHIBS (Glycine dehydrogenase [decarboxylating] OS=Shigella boydii serotype 4 (strain Sb227) GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G   + +N L  APH  S L+ + W  P S E A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAE-WAHPYSHEVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_EDWI92.721e-1240.91Glycine dehydrogenase [decarboxylating] OS=Edwards... [more]
GCSP_ECOSE2.721e-1243.18Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOHS2.721e-1243.18Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO8A2.721e-1243.18Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO552.721e-1243.18Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO242.721e-1243.18Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_BACTN2.721e-1241.18Glycine dehydrogenase [decarboxylating] OS=Bactero... [more]
GCSP_BARQU3.554e-1243.82Glycine dehydrogenase [decarboxylating] OS=Bartone... [more]
GCSP_SODGM4.641e-1243.18Glycine dehydrogenase [decarboxylating] OS=Sodalis... [more]
GCSP_SHIBS4.641e-1243.18Glycine dehydrogenase [decarboxylating] OS=Shigell... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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