CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SALNS (Glycine dehydrogenase [decarboxylating] OS=Salmonella newport (strain SL254) GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++ G     +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAGVWPQEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHISS (Glycine dehydrogenase [decarboxylating] OS=Shigella sonnei (strain Ss046) GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+++IR E  Q++     + +N L  APH  S L+ + W  P SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIDAMLAIRAEIDQVKAAVWPLEDNPLVNAPHIQSELVAE-WAHPYSREVAVFPAGVAD--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BRUO2 (Glycine dehydrogenase [decarboxylating] OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=gcvP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PA-SWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR CDA+I+I  E  ++ +G     +N L  APH  S  +   W  P +R  A  P  ++   AK+WP   RVDNV GDRNLIC+  P
Sbjct:  839 IDRLCDAMIAIAGEAKKVADGVWPADDNPLANAPHTASDTLATEWKHPYTRAEAIFPGGAFDPTAKYWPPVSRVDNVGGDRNLICSCPP 927          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ENT38 (Glycine dehydrogenase [decarboxylating] OS=Enterobacter sp. (strain 638) GN=gcvP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A+++IR E  +++ G+  + +N L  APH  + L+ + W    +RE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFIEAMLAIRHEITRVKQGEWTLEDNPLVNAPHTQNELVAE-WHHGYTREVAVFPAGMAN--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BACFR (Glycine dehydrogenase [decarboxylating] OS=Bacteroides fragilis GN=gcvP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LD +   +++I  E  +++NG+AD  +NVL  APHP   ++ D W    +RE AA P   +R  KFW    RVDN  GDR L+ T
Sbjct:  859 LDNFVLTMLTIWNEIQEVKNGEADKEDNVLINAPHPEYEVVSDQWEHCYTREKAAYPIESVRENKFWVNVARVDNTLGDRKLLPT 943          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BACFN (Glycine dehydrogenase [decarboxylating] OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gcvP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LD +   +++I  E  +++NG+AD  +NVL  APHP   ++ D W    +RE AA P   +R  KFW    RVDN  GDR L+ T
Sbjct:  859 LDNFVLTMLTIWNEIQEVKNGEADKEDNVLINAPHPEYEVVSDQWEHCYTREKAAYPIESVRENKFWVNVARVDNTLGDRKLLPT 943          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SALAR (Glycine dehydrogenase [decarboxylating] OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A+++IR E  +++ G+  + +N L  APH  + L  + W    SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFINAMLAIRAEIERVKAGEWPLEDNPLVNAPHTQNELAAE-WNHSYSREVAVFPAGVAN--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_CITK8 (Glycine dehydrogenase [decarboxylating] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=gcvP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A+++IR E  +++ G+  + +N L  APH  + L+ + W    SRE A  PA      K+WP   R+D+VYGDRNL C+ +P
Sbjct:  868 LDRFINAMLAIRAEIDRVKAGEWPLEDNPLVNAPHTQNELVAE-WNHGYSREVAVFPAGVAN--KYWPTVKRLDDVYGDRNLFCSCVP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_JANSC (Glycine dehydrogenase [decarboxylating] OS=Jannaschia sp. (strain CCS1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+ +IR E A++E+G     ++ L  APH    L+ D W +  +RE    P    R  K+WP   RVDNV GDRNLICT  P
Sbjct:  849 LDRFITAMQAIRAEIAEVEDG-LPAGDSPLHHAPHTMEDLVRD-WDRAYTREQGCFPPGAFRVDKYWPPVNRVDNVAGDRNLICTCPP 934          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_SALNS4.641e-1244.32Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SHISS6.062e-1243.18Glycine dehydrogenase [decarboxylating] OS=Shigell... [more]
GCSP_BRUO21.034e-1141.57Glycine dehydrogenase [decarboxylating] OS=Brucell... [more]
GCSP_ENT382.303e-1138.64Glycine dehydrogenase [decarboxylating] OS=Enterob... [more]
GCSP_BACFR2.303e-1141.18Glycine dehydrogenase [decarboxylating] OS=Bactero... [more]
GCSP_BACFN2.303e-1141.18Glycine dehydrogenase [decarboxylating] OS=Bactero... [more]
GCSP_SALAR5.131e-1139.77Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_CITK85.131e-1139.77Glycine dehydrogenase [decarboxylating] OS=Citroba... [more]
GCSP_JANSC8.753e-1143.18Glycine dehydrogenase [decarboxylating] OS=Jannasc... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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