CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SINMW (Glycine dehydrogenase [decarboxylating] OS=Sinorhizobium medicae (strain WSM419) GN=gcvP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 48/88 (54.55%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDAL++IREE   I  G+ D  NN LK APH    L+GD W +P SRE A  P    R  K+W    RVDNVYGDRNL+CT  P
Sbjct:  859 LDRFCDALLAIREEARAIAEGRMDKINNPLKNAPHTVEDLVGD-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLVCTCPP 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RALEJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia eutropha (strain JMP134) GN=gcvP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I+IR+E  ++E+G  D  +N LK APH  +++  + WT+  +RE AA P + LR  K+WP  GR DNVYGDRNL C+ +P
Sbjct:  882 LDRFIDAMIAIRKEIGRVEDGSFDRDDNPLKHAPHTAAVVTANEWTRKYTREEAAYPVASLRTQKYWPPVGRADNVYGDRNLFCSCVP 969          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_DINSH (Glycine dehydrogenase [decarboxylating] OS=Dinoroseobacter shibae (strain DFL 12) GN=gcvP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+++IREE   I  G  D  NN LK APH    L+GD W +P SRE A  P    R  K+WP   RVDN YGDRNL+CT  P
Sbjct:  859 LDRFCDAMLAIREEADAIAAGSLDAENNPLKRAPHTVEDLVGD-WDRPYSREQACYPPGAFRVDKYWPPVNRVDNAYGDRNLVCTCPP 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEF5 (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLIC 253
            LDR+CDA+I IREE   +ENG  D  +N LK APH  + L+G+ W+ P SRE A  P + L   K+WP  GRVDNV+GDRNL+C
Sbjct:  858 LDRFCDAMIRIREEIRAVENGALDKDDNPLKNAPHTAAELVGE-WSHPYSREQAVYPVASLVEGKYWPPVGRVDNVFGDRNLVC 940          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEAE (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas aeruginosa GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 48/88 (54.55%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+I IREE   +E G+ D  +N LK APH  + L+G+ W    SRE AA P + L  AK+WP  GRVDNVYGDRNL C+  P
Sbjct:  866 LDRFCDAMIRIREEIRAVERGELDKEDNPLKNAPHTAAELLGE-WNHAYSREQAAYPLASLVEAKYWPPVGRVDNVYGDRNLTCSCPP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHIEC (Glycine dehydrogenase [decarboxylating] OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=gcvP PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.760e-19
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A+++IREE   IE+G+ D  NN LK APH    L+G+ W +P SRE A  P    R  K+W    RVDNVYGDRNLICT  P
Sbjct:  859 LDRFCEAMLAIREEARAIEDGRMDKTNNPLKNAPHTVEDLVGE-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLICTCPP 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHILW (Glycine dehydrogenase [decarboxylating] OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=gcvP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A+++IREE   IE+G+ D  NN LK APH    L+G+ W +P SRE A  P    R  K+W    RVDNVYGDRNLICT  P
Sbjct:  859 LDRFCEAMLAIREEARAIEDGRMDKVNNPLKNAPHTVEDLVGE-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLICTCPP 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHIL3 (Glycine dehydrogenase [decarboxylating] OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=gcvP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A+++IREE   IE+G+ D  NN LK APH    L+G+ W +P SRE A  P    R  K+W    RVDNVYGDRNLICT  P
Sbjct:  859 LDRFCEAILAIREEARAIEDGRMDKVNNPLKNAPHTVEDLVGE-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLICTCPP 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHIE6 (Glycine dehydrogenase [decarboxylating] OS=Rhizobium etli (strain CIAT 652) GN=gcvP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C+A+++IREE   IE+G+ D  NN LK APH    L+G+ W +P SRE A  P    R  K+W    RVDNVYGDRNLICT  P
Sbjct:  859 LDRFCEAMLAIREEARAIEDGRMDKINNPLKNAPHTVEDLVGE-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLICTCPP 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_VIBVY (Glycine dehydrogenase [decarboxylating] OS=Vibrio vulnificus (strain YJ016) GN=gcvP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I+IREE  +++NG+  + NN L  APH    LM + W +P  RE A  P++  + +K+WP   RVDNVYGDRNL+C+
Sbjct:  861 LDRFCDAMIAIREEMTKVKNGEWPLENNPLVNAPHTQVDLMEEQWDRPYPREIACFPSAATKRSKYWPTVNRVDNVYGDRNLVCS 945          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_SINMW1.347e-1954.55Glycine dehydrogenase [decarboxylating] OS=Sinorhi... [more]
GCSP_RALEJ1.347e-1948.86Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_DINSH1.347e-1953.41Glycine dehydrogenase [decarboxylating] OS=Dinoros... [more]
GCSP1_PSEF51.347e-1954.76Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP1_PSEAE1.347e-1954.55Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_RHIEC1.760e-1953.41Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_RHILW2.298e-1953.41Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_RHIL32.298e-1953.41Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_RHIE62.298e-1953.41Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_VIBVY3.001e-1949.41Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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