CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_VIBVU (Glycine dehydrogenase [decarboxylating] OS=Vibrio vulnificus GN=gcvP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I+IREE  +++NG+  + NN L  APH    LM + W +P  RE A  P++  + +K+WP   RVDNVYGDRNL+C+
Sbjct:  861 LDRFCDAMIAIREEMTKVKNGEWPLENNPLVNAPHTQVDLMEEQWDRPYPREIACFPSAATKRSKYWPTVNRVDNVYGDRNLVCS 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_HAHCH (Glycine dehydrogenase [decarboxylating] OS=Hahella chejuensis (strain KCTC 2396) GN=gcvP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+I+IREE   IENG+ D+ ++ L  APH  + L+GD W +P SRE    P   L+  K+W   GR+DNVYGDRNL+C   P
Sbjct:  868 LDRFCDAMIAIREEIRAIENGEYDVDHSPLHHAPHTAADLVGD-WDRPYSRERGVYPLKALKADKYWSPVGRIDNVYGDRNLVCACPP 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SCHPO (Putative glycine dehydrogenase [decarboxylating], mitochondrial OS=Schizosaccharomyces pombe GN=SPAC13G6.06c PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.120e-19
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR+CDALISIR+E  +IE G     NN+L  APHP   +  + W +P +RE A  P   L+  KFWP+  R+D+ YGD+NL CT  P
Sbjct:  928 MDRFCDALISIRQEIREIEEGLQPKDNNLLVNAPHPQKDIASEKWDRPYTRERAVYPVPLLKERKFWPSVARLDDAYGDKNLFCTCSP 1015          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BORPA (Glycine dehydrogenase [decarboxylating] OS=Bordetella parapertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.120e-19
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            L+R+ +A+I+IR E AQIE+G+ D  +NVL+ APH   +L+ + W     R+ AA P + LR  K+WP   RVDN YGDRNL+C  LP
Sbjct:  862 LERFIEAMIAIRAEIAQIESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLP 949          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BORBR (Glycine dehydrogenase [decarboxylating] OS=Bordetella bronchiseptica GN=gcvP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.120e-19
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            L+R+ +A+I+IR E AQIE+G+ D  +NVL+ APH   +L+ + W     R+ AA P + LR  K+WP   RVDN YGDRNL+C  LP
Sbjct:  862 LERFIEAMIAIRAEIAQIESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLP 949          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SYNY3 (Glycine dehydrogenase [decarboxylating] OS=Synechocystis sp. (strain PCC 6803) GN=gcvP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I+I +E   I +G+ D  +N LK APH    L+   W  P S+E AA PA W +  KFWPA GR++N YGDR+L+C+
Sbjct:  889 LDRFCDAMIAIYQEAQAITHGEIDPADNPLKNAPHTAQSLICGEWNHPYSQEEAAYPAPWTKQFKFWPAVGRINNTYGDRHLVCS 973          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PSEU2 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLIC 253
            LDR+CDA+I IREE   +ENG  D  +N LK APH  + ++G  W+ P SRE A  P   L   K+WP  GRVDNV+GDRNL+C
Sbjct:  861 LDRFCDAMIKIREEIRAVENGTLDKDDNPLKNAPHTAAEIVGQ-WSHPYSREQAVYPVDSLIENKYWPPVGRVDNVFGDRNLVC 943          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PSE14 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gcvP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLIC 253
            LDR+CDA+I IREE   +ENG  D  +N LK APH  + ++G  W+ P SRE A  P   L   K+WP  GRVDNV+GDRNL+C
Sbjct:  861 LDRFCDAMIKIREEIRAVENGTLDKDDNPLKNAPHTAAEIVGQ-WSHPYSREQAVYPVDSLIENKYWPPVGRVDNVFGDRNLVC 943          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BORPE (Glycine dehydrogenase [decarboxylating] OS=Bordetella pertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            L+R+ +A+I+IR E AQ+E+G+ D  +NVL+ APH   +L+ + W     R+ AA P + LR  K+WP   RVDN YGDRNL+C  LP
Sbjct:  862 LERFIEAMIAIRAEIAQVESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLP 949          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_AGRVS (Glycine dehydrogenase [decarboxylating] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=gcvP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C A+++IREE   IE+G+ D  NN LK APH    L+G+ W +P SR+ A  P    R  K+W +  RVDNVYGDRNL+CT  P
Sbjct:  859 LDRFCTAMLAIREEARAIEDGRMDKTNNPLKNAPHTVEDLVGE-WDRPYSRDQACYPPGAFRVDKYWSSVNRVDNVYGDRNLVCTCPP 945          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_VIBVU3.001e-1949.41Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_HAHCH3.001e-1951.14Glycine dehydrogenase [decarboxylating] OS=Hahella... [more]
GCSP_SCHPO5.120e-1947.73Putative glycine dehydrogenase [decarboxylating], ... [more]
GCSP_BORPA5.120e-1948.86Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_BORBR5.120e-1948.86Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_SYNY36.686e-1949.41Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_PSEU26.686e-1953.57Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_PSE146.686e-1953.57Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_BORPE6.686e-1947.73Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_AGRVS6.686e-1951.14Glycine dehydrogenase [decarboxylating] OS=Agrobac... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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