CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_AKKM8 (Glycine dehydrogenase [decarboxylating] OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gcvP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.733e-19
Identity = 45/85 (52.94%), Postives = 53/85 (62.35%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+ +A+  I  E   I NG AD  +NVLK +PH   ++  D W  P SR  AA P S L   KFWP  GRVDNVYGDRNL+CT
Sbjct:  851 LDRFIEAMERIHAEITAIINGTADKEDNVLKNSPHTAEMVSADEWRHPYSRSEAAYPVSGLLIHKFWPYVGRVDNVYGDRNLVCT 935          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SACD2 (Glycine dehydrogenase [decarboxylating] OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I IR+E + +E+G+    NN L  APH     + +TWT+P +R+ A  P  +L   K WP   R+DNVYGDRNLIC+
Sbjct:  870 LDRFCDAMIKIRQEASLVESGELPRDNNPLVNAPHTLDDALDETWTRPYTRDEATRPLPYLHAHKIWPTVNRIDNVYGDRNLICS 954          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ROSDO (Glycine dehydrogenase [decarboxylating] OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+++IR E A IE G+ D  NN LK APH    L+ D W +P SR+    P    R  K+WP   RVDNV+GDR+L+CT  P
Sbjct:  854 LDRFCDAMLAIRAEIADIEEGRMDAANNPLKNAPHTVDDLVSD-WDRPYSRDQGCFPPGAFRVDKYWPPVNRVDNVFGDRHLVCTCPP 940          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RALSO (Glycine dehydrogenase [decarboxylating] OS=Ralstonia solanacearum GN=gcvP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I+IR E  Q+ +G  D  +N LK APH   ++M D W+   +RE AA P + LR  K+WP  GR DNVYGDRNL C  +P
Sbjct:  888 LDRFIDAMIAIRGEVDQVISGAFDREDNPLKHAPHTAQVVMADDWSHRYTREQAAYPVASLRTRKYWPPVGRADNVYGDRNLFCACVP 975          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RALPJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia pickettii (strain 12J) GN=gcvP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I+IR E  ++ +G+ D  +N LK APH  +++M D W+   +RE AA P + LR  K+WP  GR DNVYGDRNL C  +P
Sbjct:  885 LDRFIDAMIAIRGEVDKVISGEFDREDNPLKHAPHTAAVVMADDWSHKYTREQAAYPVASLRARKYWPPVGRADNVYGDRNLFCACVP 972          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_GRAFK (Glycine dehydrogenase [decarboxylating] OS=Gramella forsetii (strain KT0803) GN=gcvP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALISIR+E   I+    D  NNVLK APH   +L  D W  P SRE AA P   L   KFWP+  RVD  +GDRNL+CT  P
Sbjct:  858 LDRFCDALISIRKE---IDEVSVDDSNNVLKNAPHTIHMLTSDEWKLPYSREKAAYPLDHLHDNKFWPSVRRVDEAFGDRNLMCTCPP 942          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_VIBPA (Glycine dehydrogenase [decarboxylating] OS=Vibrio parahaemolyticus GN=gcvP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            L+R+CDA+ISIREE  +++NG+  + NN L  APH    L  + W +P SRE    P+   +  K+WP   RVDNVYGDRNLIC+
Sbjct:  861 LNRFCDAMISIREEMTKVKNGEWPLENNPLVNAPHTQVDLSAEEWDRPYSRELGCFPSKATKSWKYWPTVNRVDNVYGDRNLICS 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_VARPS (Glycine dehydrogenase [decarboxylating] OS=Variovorax paradoxus (strain S110) GN=gcvP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I+IR E  ++E G     +N LK APH  + LM   W  P SRE  A P + L+ AK+WP  GRVDNVYGDRNL C+ +P
Sbjct:  871 LDRFIDAMIAIRGEIRRVEEGVWPKDDNPLKHAPHTAASLMAAEWPHPYSRELGAFPLAELKLAKYWPPIGRVDNVYGDRNLFCSCVP 958          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PSESM (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. tomato GN=gcvP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLIC 253
            LDR+CDA+I IREE   +E+G  D  +N LK APH  + ++G  W+ P SRE A  P   L   K+WP  GRVDNV+GDRNL+C
Sbjct:  861 LDRFCDAMIKIREEIRAVEDGTLDKDDNPLKNAPHTAAEIVGQ-WSHPYSREQAVYPVDSLIENKYWPPVGRVDNVFGDRNLVC 943          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PROMT (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain NATL2A) GN=gcvP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I IREE  QI+ GK D  NN LK +PH    +  D W +P SR+ AA P       KFWP+  R++N YGDRNLIC+
Sbjct:  871 LDRFCDAMIGIREEIEQIKLGKIDPINNPLKQSPHTLKTVTSDDWDRPYSRKEAAYPLPDQEKYKFWPSVSRINNAYGDRNLICS 955          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_AKKM88.733e-1952.94Glycine dehydrogenase [decarboxylating] OS=Akkerma... [more]
GCSP_SACD21.141e-1848.24Glycine dehydrogenase [decarboxylating] OS=Sacchar... [more]
GCSP_ROSDO1.141e-1850.00Glycine dehydrogenase [decarboxylating] OS=Roseoba... [more]
GCSP_RALSO1.141e-1850.00Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_RALPJ1.141e-1848.86Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_GRAFK1.141e-1854.55Glycine dehydrogenase [decarboxylating] OS=Gramell... [more]
GCSP_VIBPA2.541e-1849.41Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_VARPS2.541e-1851.14Glycine dehydrogenase [decarboxylating] OS=Variovo... [more]
GCSP_PSESM2.541e-1852.38Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_PROMT2.541e-1851.76Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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