CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_VIBHB (Glycine dehydrogenase [decarboxylating] OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.318e-18
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I+IREE  +++NG+  + NN L  APH    L  + W +P SRE    P+   +  K+WP   RVDNVYGDRNLIC+
Sbjct:  861 LDRFCDAMIAIREEMTKVKNGEWPLDNNPLVNAPHTQFDLAKEEWDRPYSRELGCFPSKATKSWKYWPTVNRVDNVYGDRNLICS 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PROM1 (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain NATL1A) GN=gcvP PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.318e-18
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I IREE  QI+ GK D  NN LK +PH    +  D W +P SR+ AA P       KFWP+  R++N YGDRNLIC+
Sbjct:  871 LDRFCDAMIGIREEIEQIKLGKIDPINNPLKQSPHTLKRVTSDDWDRPYSRKEAAYPLPDQEKYKFWPSVSRINNAYGDRNLICS 955          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SYNR3 (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain RCC307) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+ +A+++IR E A IE G  D  +N L+ APH  + +  D W +P SRE AA P   LR  K WPA  R+DN +GDRNLICT
Sbjct:  861 LDRFVEAMMAIRAEAAAIEAGLCDRDDNPLRRAPHTLAAVTADVWERPYSREQAAYPVQGLRSNKLWPAVSRIDNAFGDRNLICT 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SYNPX (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain WH8102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+ DA+I+IR E   IE+G  D  NN LK APH  + ++ + W +P SR+ AA P    +  K WPA  R+DN YGDRNLICT
Sbjct:  862 LDRFADAMIAIRNEIRDIESGAMDASNNPLKQAPHTMAAVIAEDWDRPYSRQQAAFPLPDQQQNKVWPAVARIDNAYGDRNLICT 946          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_STRMK (Glycine dehydrogenase [decarboxylating] OS=Stenotrophomonas maltophilia (strain K279a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I IREE   IE+G+ D  +N LK APH  + +    WT    RE AA P + L+ +K+WP   RVDNVYGD+N++C  +P
Sbjct:  857 LDRFIDAMIQIREEITAIEDGRLDREDNPLKNAPHTATAVTASEWTHAYPRELAAFPLASLKQSKYWPPVARVDNVYGDKNVMCACIP 944          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_NITHX (Glycine dehydrogenase [decarboxylating] OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+I+IR E A+IE G+  +  + L+ APH    +  DTW++P SR     PA   R  K+W   GRVDN YGDRNL+C+  P
Sbjct:  862 LDRFCDAMIAIRREIAEIEAGRWSVEASPLRHAPHTVHDIADDTWSRPYSRAQGCFPAGTSRLDKYWCPVGRVDNAYGDRNLVCSCPP 949          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_DECAR (Glycine dehydrogenase [decarboxylating] OS=Dechloromonas aromatica (strain RCB) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 44/88 (50.00%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IREE  QIENG     NN LK APH  + +M   W  P SR+ A  P  W+   KFWP+  R+D+VYGDRNL C   P
Sbjct:  870 LDRFIGAMIAIREEIRQIENGVWTADNNPLKNAPHSQADVMDAEWKHPYSRQQAVFPLPWVAANKFWPSVNRIDDVYGDRNLNCACPP 957          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_VIBCM (Glycine dehydrogenase [decarboxylating] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDALI+IR E  +++NG+  + +N L  APH  + L  + W +P SRE A  P++  + +K+WP   RVDNVYGDRNL+C+
Sbjct:  861 LDRFCDALIAIRGEIDKVKNGEWPLESNPLVHAPHTQADLREEKWDRPYSREIACFPSAHTKASKYWPTVNRVDNVYGDRNLVCS 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_VIBC3 (Glycine dehydrogenase [decarboxylating] OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDALI+IR E  +++NG+  + +N L  APH  + L  + W +P SRE A  P++  + +K+WP   RVDNVYGDRNL+C+
Sbjct:  861 LDRFCDALIAIRGEIDKVKNGEWPLESNPLVHAPHTQADLREEKWDRPYSREIACFPSAHTKASKYWPTVNRVDNVYGDRNLVCS 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SYNS9 (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain CC9902) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+ DALI+IR+E   IE G  D  NN LK APH  + +M + W +P SR+ AA P       K WPA  R+DN +GDRNLICT
Sbjct:  863 LDRFADALIAIRDEVRAIETGAMDALNNPLKRAPHTMAAVMAEVWDRPYSRQQAAFPLPDQTQNKVWPAVARIDNAFGDRNLICT 947          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_VIBHB3.318e-1849.41Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_PROM13.318e-1851.76Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_SYNR34.334e-1850.59Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_SYNPX4.334e-1850.59Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_STRMK4.334e-1847.73Glycine dehydrogenase [decarboxylating] OS=Stenotr... [more]
GCSP_NITHX4.334e-1847.73Glycine dehydrogenase [decarboxylating] OS=Nitroba... [more]
GCSP_DECAR4.334e-1850.00Glycine dehydrogenase [decarboxylating] OS=Dechlor... [more]
GCSP_VIBCM5.660e-1848.24Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_VIBC35.660e-1848.24Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_SYNS95.660e-1851.76Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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