CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_STRM5 (Glycine dehydrogenase [decarboxylating] OS=Stenotrophomonas maltophilia (strain R551-3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I IREE   IE+G+ D  +N LK APH  + +    WT    RE AA P   L+  K+WP   RVDNVYGD+N++C  +P
Sbjct:  857 LDRFIDAMIQIREEITAIEDGRLDREDNPLKNAPHTATAVTASEWTHAYPRELAAFPLPSLKLQKYWPPVARVDNVYGDKNVMCACIP 944          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURPP (Glycine dehydrogenase [decarboxylating] OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A+I+IREE   +E+G++D  +N LK APH  ++++ + W    +RE AA P   L   K+WP  GR DNVYGDRNL C+ +P
Sbjct:  886 LDRFIEAMIAIREEIRAVEDGRSDREDNPLKHAPHTAAVVIANDWKHAYARETAAYPLPTLIAKKYWPPVGRADNVYGDRNLFCSCVP 973          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEPK (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas putida (strain KT2440) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLIC 253
            LDR+C+A+I IREE   +E+G  D  +N LK APH  + L+G+ WT   SRE A  P + L   K+WP  GRVDNV+GDRNL+C
Sbjct:  858 LDRFCNAMIQIREEIRAVEDGSLDKDDNPLKNAPHTAAELVGE-WTHGYSREQAVYPLASLVEGKYWPPVGRVDNVFGDRNLVC 940          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_XANCP (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas campestris pv. campestris GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I IREE   IE+G+ D  +N LK APH  + +    WT    RE AA P   L+  K+WP  GRVDNVYGD+N++C  +P
Sbjct:  878 LDRFIDAMIQIREEIRAIEDGRLDREDNPLKHAPHTATQVSASEWTHAYPRELAAFPLPSLKQQKYWPPVGRVDNVYGDKNVMCACIP 965          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_XANC8 (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I IREE   IE+G+ D  +N LK APH  + +    WT    RE AA P   L+  K+WP  GRVDNVYGD+N++C  +P
Sbjct:  878 LDRFIDAMIQIREEIRAIEDGRLDREDNPLKHAPHTATQVSASEWTHAYPRELAAFPLPSLKQQKYWPPVGRVDNVYGDKNVMCACIP 965          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURXL (Glycine dehydrogenase [decarboxylating] OS=Burkholderia xenovorans (strain LB400) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ +A+I+IREE   +E G++D  +N LK APH  ++++ + W    +RE AA P   L   K+WP  GR DNVYGDRNL C+ +P
Sbjct:  886 LDRFIEAMIAIREEIRAVEEGRSDREDNPLKHAPHTAAVVIANDWKHAYARETAAYPLPTLIAKKYWPPVGRADNVYGDRNLFCSCVP 973          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ALISL (Glycine dehydrogenase [decarboxylating] OS=Aliivibrio salmonicida (strain LFI1238) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+C+A+I+IREE  +++ G+  + NN L  APH    LM + W  P +RE A  P+   + +K+WP   RVDNVYGDRNLIC+
Sbjct:  862 LDRFCEAMIAIREEMNKVQQGEWPLDNNPLVNAPHTQVDLMSNEWDHPYTREVACFPSVQAKASKYWPTVNRVDNVYGDRNLICS 946          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_AGRRK (Glycine dehydrogenase [decarboxylating] OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+C A+++IREE   IE G+ D  +N LK APH    L+G+ W +P SRE A  P    R  K+W    RVDNVYGDRNL+C+  P
Sbjct:  859 LDRFCAAMLAIREEARAIEEGRMDKTDNPLKNAPHTVEDLVGE-WNRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLVCSCPP 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PHOPR (Glycine dehydrogenase [decarboxylating] OS=Photobacterium profundum GN=gcvP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I+IR+E A+++ G+  I +N L  APH  + LM   W +  SRE A  P    R +K+WP   RVDNV+GDRNLIC+
Sbjct:  865 LDRFCDAMIAIRQEIARVQEGEWPIDDNPLVHAPHTQADLMETEWNRAYSREIACFPTDHTRASKYWPTVNRVDNVFGDRNLICS 949          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURM1 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gcvP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C  +P
Sbjct:  883 LDRFIDAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAYPVASLGTNKYWPPVGRADNAYGDRNLFCACVP 970          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_STRM55.660e-1847.73Glycine dehydrogenase [decarboxylating] OS=Stenotr... [more]
GCSP_BURPP5.660e-1846.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP1_PSEPK5.660e-1852.38Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_XANCP7.393e-1848.86Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]
GCSP_XANC87.393e-1848.86Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]
GCSP_BURXL7.393e-1846.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_ALISL7.393e-1848.24Glycine dehydrogenase [decarboxylating] OS=Aliivib... [more]
GCSP_AGRRK7.393e-1850.00Glycine dehydrogenase [decarboxylating] OS=Agrobac... [more]
GCSP_PHOPR9.655e-1849.41Glycine dehydrogenase [decarboxylating] OS=Photoba... [more]
GCSP_BURM19.655e-1846.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
back to top