CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_CHICK (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Gallus gallus GN=GLDC PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.647e-17
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLR-FAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+ISIR+E A IE G+ D   N LK +PH  + +    W +P SRE AA P  +++  +KFWP   R+D++YGD++L+CT  P
Sbjct:  900 LDRFCDAMISIRQEIADIEEGRMDPQVNPLKMSPHTLNCVTSSKWDRPYSREVAAFPLPFVKPESKFWPTIARIDDIYGDQHLVCTCPP 988          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURS3 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia sp. (strain 383) GN=gcvP PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.151e-17
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IR+E   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DNVYGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWLHAYSREQAAYPVASLGTNKYWPPVGRADNVYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHOP5 (Glycine dehydrogenase [decarboxylating] OS=Rhodopseudomonas palustris (strain BisA53) GN=gcvP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.809e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+I+IR E A+IE G+  +  + L+ APH    L  D W +P SR     PA   R  K+W   GR+DNVYGDRNL+C+  P
Sbjct:  865 LDRFCDAMIAIRREIAEIETGRWKVEQSPLRFAPHTVHDLAEDHWHRPYSRAIGCFPAGTARHDKYWCPVGRIDNVYGDRNLVCSCPP 952          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURCM (Glycine dehydrogenase [decarboxylating] OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=gcvP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.809e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IREE   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAYPVASLGTNKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURCJ (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gcvP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.809e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IREE   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAYPVASLGTNKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURCH (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain HI2424) GN=gcvP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.809e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IREE   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAYPVASLGTNKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURCC (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain MC0-3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.809e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IREE   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAYPVASLGTNKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURCA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain AU 1054) GN=gcvP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.809e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IREE   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAYPVASLGTNKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURA4 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia ambifaria (strain MC40-6) GN=gcvP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.809e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IREE   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAYPVASLGTNKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_XANOM (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I IREE   IE+G+ D  +N LK APH  + +    WT    RE AA P   L+  K+WP   RVDNVYGD+N++C  +P
Sbjct:  880 LDRFIDAMIQIREEIRAIEDGRLDREDNPLKHAPHTATQVSASEWTHAYPRELAAFPLPSLKQQKYWPPVARVDNVYGDKNVMCACIP 967          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_CHICK1.647e-1747.19Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_BURS32.151e-1746.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_RHOP52.809e-1747.73Glycine dehydrogenase [decarboxylating] OS=Rhodops... [more]
GCSP_BURCM2.809e-1746.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCJ2.809e-1746.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCH2.809e-1746.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCC2.809e-1746.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCA2.809e-1746.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURA42.809e-1746.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_XANOM3.669e-1747.73Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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