CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_XANC5 (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I IREE   IE+G+ D  +N LK APH  + +    WT    RE AA P   L+  K+WP   RVDNVYGD+N++C  +P
Sbjct:  857 LDRFIDAMIQIREEIRAIEDGRLDREDNPLKHAPHTATQVSASEWTHAYPRELAAFPLPSLKQQKYWPPVARVDNVYGDKNVMCACIP 944          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_XANAC (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas axonopodis pv. citri GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA+I IREE   IE+G+ D  +N LK APH  + +    WT    RE AA P   L+  K+WP   RVDNVYGD+N++C  +P
Sbjct:  880 LDRFIDAMIQIREEIRAIEDGRLDREDNPLKHAPHTATQVSASEWTHAYPRELAAFPLPSLKQQKYWPPVARVDNVYGDKNVMCACIP 967          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_MOUSE (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Mus musculus GN=Gldc PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLR-FAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+ISIR+E A IE G+ D   N LK +PH  + +    W +P SRE AA P  +++   KFWP   R+D++YGD++L+CT  P
Sbjct:  921 LDRFCDAMISIRQEIADIEEGRIDPRVNPLKMSPHSLTCVTSSCWDRPYSREVAAFPLPFVKPENKFWPTIARIDDIYGDQHLVCTCPP 1009          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_BURVG (Glycine dehydrogenase [decarboxylating] OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+  A+I+IREE   +E G+AD  +N L+ APH  +++  + W    SRE AA P + L   K+WP  GR DN YGDRNL C+ +P
Sbjct:  883 LDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAYPVASLVTNKYWPPVGRADNAYGDRNLFCSCVP 970          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_RHOPA (Glycine dehydrogenase [decarboxylating] OS=Rhodopseudomonas palustris GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            +DR+CDA+I+IR E AQ+E G+  I  + L+ APH    +    WT+P  R     PA   R  K+W   GRVDNVYGDRNLIC+  P
Sbjct:  888 IDRFCDAMIAIRREIAQVEAGRYPIEQSPLRHAPHTAHDVTSAEWTRPYPRTEGCFPAPNSRTDKYWSPVGRVDNVYGDRNLICSCPP 975          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PSYIN (Glycine dehydrogenase [decarboxylating] OS=Psychromonas ingrahamii (strain 37) GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            LDR+CDA+I+IR E  QIE+G+    +N L  APH    LM   WT   SRE A  P+   + +K+WP   RVDNV+GDRNLIC+
Sbjct:  872 LDRFCDAMIAIRHEIKQIEDGEWSATDNPLVNAPHTQVDLMESEWTHGYSRELACFPSKHSKDSKYWPTVNRVDNVFGDRNLICS 956          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PELUB (Glycine dehydrogenase [decarboxylating] OS=Pelagibacter ubique GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICT 256
            +D++C  LI I++E  +I++G+ D  +N LK APH    L  + W     RE AA P+ +LR  K+WP  GRVDNVYGD+NL CT
Sbjct:  856 IDKFCSTLIKIKQEIDKIQSGEYDKTDNPLKNAPHTHVELTSNKWDHKYEREEAAYPSEFLRTNKYWPPVGRVDNVYGDKNLFCT 940          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_NITWN (Glycine dehydrogenase [decarboxylating] OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+I+IR+E A+IE G+  +  + L+ APH    +  D W++P SR     P+   R  K+W   GRVDN YGDRNL+C+  P
Sbjct:  858 LDRFCDAMIAIRQEIAEIEAGRWKVEASPLRHAPHTAHDIADDAWSRPYSRAQGCFPSGSSRSDKYWCPVGRVDNAYGDRNLVCSCPP 945          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_HUMAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Homo sapiens GN=GLDC PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLR-FAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDA+ISIR+E A IE G+ D   N LK +PH  + +    W +P SRE AA P  +++   KFWP   R+D++YGD++L+CT  P
Sbjct:  916 LDRFCDAMISIRQEIADIEEGRIDPRVNPLKMSPHSLTCVTSSHWDRPYSREVAAFPLPFVKPENKFWPTIARIDDIYGDQHLVCTCPP 1004          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SHEB9 (Glycine dehydrogenase [decarboxylating] OS=Shewanella baltica (strain OS195) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTW-TKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+ DA++SIR E A++E+G+  + NN L  APH  + +M   + T+P SRE A  P++ +R  KFWP   R+D+VYGDRNL+C+  P
Sbjct:  869 LDRFIDAMVSIRAEIAKVESGEWPVDNNPLHNAPHTMADIMDPEFDTRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLMCSCAP 957          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_XANC53.669e-1747.73Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]
GCSP_XANAC3.669e-1747.73Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]
GCSP_MOUSE3.669e-1747.19Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_BURVG3.669e-1746.59Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_RHOPA4.792e-1747.73Glycine dehydrogenase [decarboxylating] OS=Rhodops... [more]
GCSP_PSYIN4.792e-1750.59Glycine dehydrogenase [decarboxylating] OS=Psychro... [more]
GCSP_PELUB4.792e-1747.06Glycine dehydrogenase [decarboxylating] OS=Pelagib... [more]
GCSP_NITWN4.792e-1745.45Glycine dehydrogenase [decarboxylating] OS=Nitroba... [more]
GCSP_HUMAN4.792e-1747.19Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_SHEB98.174e-1747.19Glycine dehydrogenase [decarboxylating] OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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