CX300616

Overview
NameCX300616
Unique NameCX300616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.524e-14
Identity = 43/78 (55.13%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VTVASVKNF L+                     D + ++LQFGKV  ++FTMDYR PLSAFQAFAI LSSF TKLACE
Sbjct:  288 VTVASVKNFQLVAAADPNDPASSK---------DEETVLLQFGKVDDNIFTMDYRQPLSAFQAFAISLSSFGTKLACE 356          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VT ASVKNF +I                     D D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE
Sbjct:  446 VTQASVKNFQIIHGN------------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VT ASVKNF +I                     D D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE
Sbjct:  446 VTQASVKNFQIIHGN------------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VT ASVKNF +I                     D D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE
Sbjct:  447 VTQASVKNFQIIHGN------------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TULP1_MOUSE (Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13
Identity = 41/78 (52.56%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VT ASVKNF ++                     D D I+LQFG+V +D FT+DYRYPL A QAFAI LSSFD KLACE
Sbjct:  484 VTQASVKNFQIVHAD------------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 543          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TULP1_HUMAN (Tubby-related protein 1 OS=Homo sapiens GN=TULP1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13
Identity = 41/78 (52.56%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VT ASVKNF ++                     D D I+LQFG+V +D FT+DYRYPL A QAFAI LSSFD KLACE
Sbjct:  483 VTQASVKNFQIVHAD------------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 542          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TULP3_MOUSE (Tubby-related protein 3 OS=Mus musculus GN=Tulp3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.161e-12
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VT ASVKNF ++                     D D I++QFG+V  D+FT+DY YPL A QAFAI LSSFD+KLACE
Sbjct:  401 VTQASVKNFQIVHGN------------------DPDYIVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 460          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12
Identity = 42/77 (54.55%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDK-IILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLA 240
            V VASVKNF LI                       DK ++LQFGK+  D+FTMDYR PLSAFQAFAICLS+F TKLA
Sbjct:  306 VMVASVKNFQLIAPVEPGEPS--------------DKTVVLQFGKIDDDVFTMDYRQPLSAFQAFAICLSNFGTKLA 368          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TULP3_HUMAN (Tubby-related protein 3 OS=Homo sapiens GN=TULP3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VT ASVKNF ++                     D D I++QFG+V  D+FT+DY YPL A QAF I LSSFD+KLACE
Sbjct:  383 VTQASVKNFQIVHKN------------------DPDYIVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDSKLACE 442          
The following BLAST results are available for this feature:
BLAST of CX300616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
TLP1_ORYSJ7.524e-1455.13Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TUB_RAT2.859e-1352.56Tubby protein homolog OS=Rattus norvegicus GN=Tub ... [more]
TUB_MOUSE2.859e-1352.56Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1[more]
TUB_HUMAN2.859e-1352.56Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 ... [more]
TULP1_MOUSE4.877e-1352.56Tubby-related protein 1 OS=Mus musculus GN=Tulp1 P... [more]
TULP1_HUMAN4.877e-1352.56Tubby-related protein 1 OS=Homo sapiens GN=TULP1 P... [more]
TULP3_MOUSE3.161e-1250.00Tubby-related protein 3 OS=Mus musculus GN=Tulp3 P... [more]
TLP2_ORYSJ7.043e-1254.55Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TULP3_HUMAN1.201e-1148.72Tubby-related protein 3 OS=Homo sapiens GN=TULP3 P... [more]

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Properties
Property NameValue
Genbank descriptionC07012C09SK SaltLeaf1 Citrus clementina cDNA clone C07012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300616 ID=CX300616; Name=CX300616; organism=Citrus clementina; type=EST; length=586bp
TCGGCACGAGGGGTGACTGTTGCATCAGTCAAGAATTTCCATCTGATTGC
TGCAACTCAGCCTGCAGCTGGTGCGCCCACACCATCGCAGCCACCCCCGC
CGCCCCCGTCAGATCACGATAAGATTATTCTGCAATTTGGCAAAGTTGGC
AAGGATATGTTCACAATGGATTACCGGTATCCTCTGTCTGCGTTTCAGGC
TTTTGCGATCTGCTTGAGTAGTTTCGACACCAAATTGGCATGTGAATAGA
AGAAAATAGAGAGGCAAGAAGTAGAAAATTTTAGTTTGTTCTGCTTGTTT
TCTTTTTCTAGAGTTCTATATAGAATGAAGAAGTTGTATGCAGTGTACAA
CACATAGCTGGACTTCAAATTACAGGACACCATATCTGTGATCATGGGAG
AAGAATCCTGTTTTTTCTTTGTTTCCTCAAATTTCGGTTATTTTTTTTAA
CTTTGATTTAGCTTGCTCTGTATGTTTCCTATTGTTTAATCTAAAAAGAA
ACATTTCAAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACCCTCGAGGGGGGCGCCCGGT
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