CX300616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.524e-14 Identity = 43/78 (55.13%), Postives = 49/78 (62.82%), Query Frame = 1 Query: 13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246 VTVASVKNF L+ D + ++LQFGKV ++FTMDYR PLSAFQAFAI LSSF TKLACE Sbjct: 288 VTVASVKNFQLVAAADPNDPASSK---------DEETVLLQFGKVDDNIFTMDYRQPLSAFQAFAISLSSFGTKLACE 356
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13 Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246 VT ASVKNF +I D D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE Sbjct: 446 VTQASVKNFQIIHGN------------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13 Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246 VT ASVKNF +I D D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE Sbjct: 446 VTQASVKNFQIIHGN------------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13 Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246 VT ASVKNF +I D D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE Sbjct: 447 VTQASVKNFQIIHGN------------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TULP1_MOUSE (Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13 Identity = 41/78 (52.56%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246 VT ASVKNF ++ D D I+LQFG+V +D FT+DYRYPL A QAFAI LSSFD KLACE Sbjct: 484 VTQASVKNFQIVHAD------------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 543
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TULP1_HUMAN (Tubby-related protein 1 OS=Homo sapiens GN=TULP1 PE=1 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13 Identity = 41/78 (52.56%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246 VT ASVKNF ++ D D I+LQFG+V +D FT+DYRYPL A QAFAI LSSFD KLACE Sbjct: 483 VTQASVKNFQIVHAD------------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 542
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TULP3_MOUSE (Tubby-related protein 3 OS=Mus musculus GN=Tulp3 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.161e-12 Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246 VT ASVKNF ++ D D I++QFG+V D+FT+DY YPL A QAFAI LSSFD+KLACE Sbjct: 401 VTQASVKNFQIVHGN------------------DPDYIVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 460
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12 Identity = 42/77 (54.55%), Postives = 47/77 (61.04%), Query Frame = 1 Query: 13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDK-IILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLA 240 V VASVKNF LI DK ++LQFGK+ D+FTMDYR PLSAFQAFAICLS+F TKLA Sbjct: 306 VMVASVKNFQLIAPVEPGEPS--------------DKTVVLQFGKIDDDVFTMDYRQPLSAFQAFAICLSNFGTKLA 368
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TULP3_HUMAN (Tubby-related protein 3 OS=Homo sapiens GN=TULP3 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11 Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 1 Query: 13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246 VT ASVKNF ++ D D I++QFG+V D+FT+DY YPL A QAF I LSSFD+KLACE Sbjct: 383 VTQASVKNFQIVHKN------------------DPDYIVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDSKLACE 442 The following BLAST results are available for this feature:
BLAST of CX300616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300616 ID=CX300616; Name=CX300616; organism=Citrus clementina; type=EST; length=586bpback to top |