CX300625

Overview
NameCX300625
Unique NameCX300625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1774 contig Ccv1_Contig1774:226..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300625 vs. ExPASy Swiss-Prot
Match: HPPA_CHRVI (Pyrophosphate-energized proton pump (Fragment) OS=Chromatium vinosum GN=hppA PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.561e-12
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 2 
Query:  116 LFSYLVDGLC-SAVGKTAQEVVNEVRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIKPGALAIISPLVIGL 337
            L  YL   +   AVG+ A  VV EVRRQF E  GIME   KPDY+R V ++  A+++EM+ P  L I+ P+ + +
Sbjct:   80 LVPYLFGAMAMEAVGRAAGSVVIEVRRQFREIKGIMEGTAKPDYSRAVDLLTKAAIKEMVVPSLLPILVPVAVAI 154

HSP 2 Score: 29.6462 bits (65), Expect = 1.561e-12
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:  421 VSGILMALFLNTAGGAWDNA 480
            V+G+ +A+ + T GGAWDNA
Sbjct:  178 VTGLFVAISMCTGGGAWDNA 197
The following BLAST results are available for this feature:
BLAST of CX300625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HPPA_CHRVI1.561e-1244.00Pyrophosphate-energized proton pump (Fragment) OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012D06SK SaltLeaf1 Citrus clementina cDNA clone C07012D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300625 ID=CX300625; Name=CX300625; organism=Citrus clementina; type=EST; length=686bp
TTTCTTCTGTTCAGTGCTTATATGGATGAAGTTGCTACATTTGCACAGGA
ACCTTTTAAACAGGTGGATATTGCCATTCCGGAAGTTTTCGTTGGAGGAC
TGTTGGGATCCATGCTTATTTTCTTACTTAGTGGATGGGCTTTGCTCTGC
AGTTGGCAAAACTGCTCAGGAGGTTGTTAATGAGGTTAGAAGACAGTTCA
TTGAGAGGCCTGGTATCATGGAGTACAAGGAGAAGCCAGACTATGCTCGC
TGTGTCGCAATTGTGGCATCTGCATCTTTGCGGGAGATGATAAAGCCTGG
TGCCCTCGCTATCATATCACCATTAGTGATTGGTCTTTCTTTTTTCGGAT
TTTGGGATACTATACAGGACATGCGCTACTAGGGGCCAAAGTGGTGGCTG
CTTTACTGATGTTTGCAACTGTCTCTGGTATTCTTATGGCTCTTTTCCTG
AACACAGCCGGAGGAGCATGGGATAATGCAAAGAAGTTCATAGAGACTGG
GGCTCTTGGAGGCAAAGGTAGTGATACTCATAAAGCAGCGGTCACAGGAG
ATACTGTGGGCGATCCATTCAAAGACACAGCCGGACCTTCACTTCATGTT
CTCATTAAAATGCTTGCGACCATTACGCTTGTCATGGCTCCCATCTTCCT
GTGAGAGAGTTGTTAATATCTATCGCAGTTTTTCCC
back to top