CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:958..1617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO2_YEAST (Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=SOR2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.813e-19
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST----NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK-NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS-ARGGTAIKVM 477
            AFGA  ++ VDV D +L  AK  GA N    S       QD+A+ V+K+    G   DV F+C+G +  +  A+  T+ GG +  VGMG      P+   + +E+ ++G FRY    +   +  + +GK++VKPLITH+F F  ++  +A++ + A GG  +K +
Sbjct:  192 AFGATDVIFVDVFDNKLQRAKDFGATNTFNSSQFSTDKAQDLADGVQKLLG--GNHADVVFECSGADVCIDAAVKTTKVGGTMVQVGMGKNYTNFPIAEVSGKEMKLIGCFRYSFGDYRDAVNLVATGKVNVKPLITHKFKF--EDAAKAYDYNIAHGGEVVKTI 352          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO1_YEAST (Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisiae GN=SOR1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.813e-19
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST----NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK-NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS-ARGGTAIKVM 477
            AFGA  ++ VDV D +L  AK  GA N    S       QD+A+ V+K+    G   DV F+C+G +  +  A+  T+ GG +  VGMG      P+   + +E+ ++G FRY    +   +  + +GK++VKPLITH+F F  ++  +A++ + A GG  +K +
Sbjct:  192 AFGATDVIFVDVFDNKLQRAKDFGATNTFNSSQFSTDKAQDLADGVQKLLG--GNHADVVFECSGADVCIDAAVKTTKVGGTMVQVGMGKNYTNFPIAEVSGKEMKLIGCFRYSFGDYRDAVNLVATGKVNVKPLITHKFKF--EDAAKAYDYNIAHGGEVVKTI 352          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: XYL2_YEAST (D-xylulose reductase OS=Saccharomyces cerevisiae GN=XYL2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 1
Query:    4 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSA 450
            FGA  +V VD+ + +L  A++ GA +IV  S +L         I+KA+G  G DV F+C+G    +   +   +AGG +  VGMG  E+  P++    +E+   G FRY +  +   +E + S K+ +KP ITHR+ F  K+  EAFE ++
Sbjct:  194 FGAADVVFVDLLENKLETARQFGATHIVN-SGDLPHGVTVDSVIKKAIGKKGADVVFECSGAEPCVRAGIEVCKAGGTIVQVGMGQEEIQFPISIIPTKELTFQGCFRYCQGDYSDSIELVSSRKLSLKPFITHRYSF--KDAVEAFEETS 341          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURP8 (L-threonine 3-dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=tdh PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.583e-15
Identity = 49/153 (32.03%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV+DYRL +A+K+GA   V VS   L+D+  ++      M  G DV  + +G     ++ L A   GGK+ L+G+   +  +  T    + +++ G++  +   TW   +  L+SG +D+ P++THRF     + E+AF T   G
Sbjct:  187 GARNVVITDVNDYRLELARKMGATRAVNVSRETLRDVMRDLH-----MTEGFDVGLEMSGVPSAFTSMLEAMNHGGKIALLGIPPAQTAIDWTQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPILTHRFAVD--DYEKAFATMLSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURPP (L-threonine 3-dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=tdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 48/153 (31.37%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV+DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L A   GGK+ L+G+   +  +  T    + +++ G++  +   TW   +  L+SG +D+ P++TH   F   + +EAF T   G
Sbjct:  187 GARNVVITDVNDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSMLEAMNHGGKIALLGIPPAQTAIDWTQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPILTHH--FKVDDYQEAFATMLSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_MARMS (L-threonine 3-dehydrogenase OS=Marinomonas sp. (strain MWYL1) GN=tdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 47/153 (30.72%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVF--RYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV+D+RL +AKK+GA   V VS  +L+D+  E++     M  G DV  + +G +    + L     GGK+ ++G+  ++  +       + + + G++      TW   +  L+SG +D+ P+ITHR  F   E ++ F+T   G
Sbjct:  187 GARNVVITDVNDFRLDLAKKMGATRTVNVSRESLKDVMTEID-----MHEGFDVGLEMSGNDMAFRSMLECMNHGGKIAMLGIPGKDTLIDWNQVIFKGLIIKGIYGREMYETWYKMVAMLQSG-LDISPIITHR--FKVDEFQQGFDTMGSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURVG (L-threonine 3-dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=tdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V V+  +L+D+  E+      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P++THRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVARESLRDVMAELR-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIVTHRFAVDDYEKGFAAMLSGESGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURA4 (L-threonine 3-dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=tdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSMLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEKGFAAMLSGESGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: YDJJ_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein ydjJ OS=Escherichia coli (strain K12) GN=ydjJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA-----REVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS 447
            GA  I +VDV + RL++A++LGA  ++  +   +D     ++  + MG   D+ F+ AG   T+  A      GGK+ +VG      TVP   A       REV +  VFRY N +P+ +E + SG+ DVK ++TH + +  ++V++AFE S
Sbjct:  192 GATEIAVVDVLEKRLAMAEQLGATVVINGAK--EDTIARCQQFTEDMGA--DIVFETAGSAVTVKQAPYLVMRGGKIMIVG------TVPGDSAINFLKINREVTIQTVFRYANRYPVTIEAISSGRFDVKSMVTHIYDY--RDVQQAFEES 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHEFN (L-threonine 3-dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 50/162 (30.86%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+GA   V V+T NL+D+ +E+      M  G DV  + +G        L     GGK+ ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH   FS  + ++ F+ + R G + KV+ N
Sbjct:  187 GARHVVITDVNEYRLDLARKMGATRAVNVATENLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKIAMLGIPGGEMAIDWSKIIFKGLIIKGIYGREMFETWYKMASLIQSG-LDLSPIITHH--FSIDDFQKGFD-AMRSGQSGKVILN 339          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
DHSO2_YEAST9.813e-1933.94Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisi... [more]
DHSO1_YEAST9.813e-1933.94Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisi... [more]
XYL2_YEAST1.567e-1635.10D-xylulose reductase OS=Saccharomyces cerevisiae G... [more]
TDH_BURP86.583e-1532.03L-threonine 3-dehydrogenase OS=Burkholderia phymat... [more]
TDH_BURPP3.267e-1431.37L-threonine 3-dehydrogenase OS=Burkholderia phytof... [more]
TDH_MARMS4.267e-1430.72L-threonine 3-dehydrogenase OS=Marinomonas sp. (st... [more]
TDH_BURVG4.267e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia vietna... [more]
TDH_BURA44.267e-1431.21L-threonine 3-dehydrogenase OS=Burkholderia ambifa... [more]
YDJJ_ECOLI5.572e-1434.21Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_SHEFN5.572e-1430.86L-threonine 3-dehydrogenase OS=Shewanella frigidim... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
back to top