CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_FRATN (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. novicida (strain U112) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 45/156 (28.85%), Postives = 82/156 (52.56%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA RIVI D+++YRL +A+  GA   + V+   N  ++ +++ K+   +G   G D+  + +G N  +S  L     GGK+ L+G+   +++V       + + + G++  +   TW L    L++G +D+ P+ITHR      E ++ FE    G
Sbjct:  188 GARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDIGLEMSGINSAISMMLDVMNHGGKLSLLGISAGDISVDWGAILFKGLTLKGIYGREMFETWYLMTSMLQAG-MDMNPIITHRLHID--EFQKGFEIMKSG 340          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_ENT38 (L-threonine 3-dehydrogenase OS=Enterobacter sp. (strain 638) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRLS+A+K+G    V VS  NL D+  E+      M  G DV  + +G      + L     GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITH FG    + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLSLARKMGVTRAVDVSKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRSMLDTMNHGGRIAMLGIPPSDMSIDWNKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHHFGID--DFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_ECO5E (L-threonine 3-dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 45/153 (29.41%), Postives = 79/153 (51.63%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+    G
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFDAMCSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_ECO57 (L-threonine 3-dehydrogenase OS=Escherichia coli O157:H7 GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 45/153 (29.41%), Postives = 79/153 (51.63%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+    G
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFDAMCSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_ECO24 (L-threonine 3-dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 48/162 (29.63%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  +  G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMPGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_CHRVO (L-threonine 3-dehydrogenase OS=Chromobacterium violaceum GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/157 (29.94%), Postives = 78/157 (49.68%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI DV+DYRL +AKK+GA   V V+  +L+ + +E+      M  G DV  + +G  +     L     GGKV L+G+      +       + +++ G++  +   TW   +  ++SG +D+ P+ITH F   + E   A   S + G  I
Sbjct:  187 GARHVVITDVNDYRLELAKKMGATRAVNVAREDLKAVMQELH-----MSEGFDVGLEMSGNPQAFRQMLETMNHGGKVALLGIPPSNTAIDWNQVIFKGLEIKGIYGREMFETWYKMVALIQSG-LDISPIITHHFKVDEFEQGFAAMLSGQSGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHESH (L-threonine 3-dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 47/162 (29.01%), Postives = 84/162 (51.85%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A K+GA   V V+  +L+ + EE+      M  G DV  + +G      + L     GGK+ ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH F     + ++ F+ + R G + KV+ N
Sbjct:  187 GARHVVITDVNEYRLELANKMGATRAVNVAKESLEGVMEEL-----GMTEGFDVGLEMSGVPSAFHSMLDTMNHGGKIAMLGIPGGEMAIDWSKVIFKGLILKGIYGREMFETWYKMASLIQSG-LDISPIITHHFKID--DFQQGFD-AMRSGQSGKVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHIDS (L-threonine 3-dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G      V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAANVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHESR (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-7) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 43/153 (28.10%), Postives = 78/153 (50.98%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV++YRL +A+K+GA   V V+  NL+D+ +E+      M  G DV  + +G        L     GGK+ ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH +     + ++ F+    G
Sbjct:  187 GARHVVITDVNEYRLELARKMGATRAVNVAQENLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKIAMLGIPGGEMAIDWSKVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDISPIITHHYKID--DFQKGFDAMGSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHEON (L-threonine 3-dehydrogenase OS=Shewanella oneidensis GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 43/153 (28.10%), Postives = 78/153 (50.98%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV++YRL +A+K+GA   V V+  NL+D+ +E+      M  G DV  + +G        L     GGK+ ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH +     + ++ F+    G
Sbjct:  187 GARHVVITDVNEYRLELARKMGATRAVNVAQENLKDVMKEL-----GMTEGFDVGLEMSGVPSAFRAMLDTMNHGGKIAMLGIPGGEMAIDWSKVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDISPIITHHYKID--DFQKGFDAMGSG 331          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_FRATN1.793e-1228.85L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_ENT381.793e-1229.01L-threonine 3-dehydrogenase OS=Enterobacter sp. (s... [more]
TDH_ECO5E1.793e-1229.41L-threonine 3-dehydrogenase OS=Escherichia coli O1... [more]
TDH_ECO571.793e-1229.41L-threonine 3-dehydrogenase OS=Escherichia coli O1... [more]
TDH_ECO241.793e-1229.63L-threonine 3-dehydrogenase OS=Escherichia coli O1... [more]
TDH_CHRVO1.793e-1229.94L-threonine 3-dehydrogenase OS=Chromobacterium vio... [more]
TDH_SHESH2.341e-1229.01L-threonine 3-dehydrogenase OS=Shewanella sedimini... [more]
TDH_SHIDS3.058e-1229.01L-threonine 3-dehydrogenase OS=Shigella dysenteria... [more]
TDH_SHESR3.058e-1228.10L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHEON3.058e-1228.10L-threonine 3-dehydrogenase OS=Shewanella oneidens... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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