CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHEAM (L-threonine 3-dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 46/162 (28.40%), Postives = 85/162 (52.47%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+GA   V V+  NL+D+ +++      M  G DV  + +G        L     GGK+ ++G+   EM +  +    + + + G++  +   TW      L+SG +D+ P++TH   F   + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGATRAVNVAKENLKDVMKDL-----GMTEGFDVGLEMSGVPAAFHAMLDTMNHGGKIAMLGIPGGEMAIDWSKVIFKGLIIKGIYGREMFETWYKMASLLQSG-LDLSPIVTHH--FKVDDFQQGFD-AMRSGQSGKVILS 339
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALTY (L-threonine 3-dehydrogenase OS=Salmonella typhimurium GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALSV (L-threonine 3-dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALPK (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALPC (L-threonine 3-dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALPB (L-threonine 3-dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALPA (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALNS (L-threonine 3-dehydrogenase OS=Salmonella newport (strain SL254) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALHS (L-threonine 3-dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALG2 (L-threonine 3-dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFCTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_SHEAM3.058e-1228.40L-threonine 3-dehydrogenase OS=Shewanella amazonen... [more]
TDH_SALTY3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella typhimur... [more]
TDH_SALSV3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella schwarze... [more]
TDH_SALPK3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPC3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPB3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPA3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALNS3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella newport ... [more]
TDH_SALHS3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella heidelbe... [more]
TDH_SALG23.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella gallinar... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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