CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALEP (L-threonine 3-dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALDC (L-threonine 3-dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALCH (L-threonine 3-dehydrogenase OS=Salmonella choleraesuis GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SALA4 (L-threonine 3-dehydrogenase OS=Salmonella agona (strain SL483) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_PYRKO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus kodakaraensis GN=tdh PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 53/164 (32.32%), Postives = 84/164 (51.22%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVP---LTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRF-GFSQKEVEEAFETSARGGTAIKVMF 480
            A GA  +++ +  ++R  +AKK+GAD +V      +D  + V  I    G G++V  + +G  K +   L A   GG+V L+G+  RE+T+    L    A EV  +       TW      ++SGK+++ P+ITH++ GF   + EEAFE    G T   V F
Sbjct:  189 ASGAYPVIVSEPSEFRRKLAKKVGADYVVNPFE--EDPVKFVMDITD--GAGVEVFLEFSGAPKALEQGLKAVTPGGRVSLLGLFPREVTIDFNNLIIFKALEVHGITGRHLWETWYTVSSLIQSGKLNLDPIITHKYKGFD--KFEEAFELMRAGKTGKVVFF 346          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_ERWCT (L-threonine 3-dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 48/162 (29.63%), Postives = 82/162 (50.62%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV+ YRL +A K+GA   V V+   L D+      I+  M  G D+  + +G        L A   GG++ ++G+ H  M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ N
Sbjct:  187 GARNVVITDVNAYRLELASKMGATRAVNVAEEKLTDV-----MIELGMTEGFDIGLEMSGAPSAFRAMLKAMNHGGRIAMLGIPHEPMSIDWGEVIFKGLFIKGIYGREMFETWYKMSALIQSG-LDLSPIITHRFHID--EFQKGFD-AMRSGQSGKVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: XYLD_RHILO (Putative D-xylulose reductase OS=Rhizobium loti GN=mlr4915 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 46/152 (30.26%), Postives = 78/152 (51.32%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            A G  +++I D    +L +A +     IV V+   + + + V       G   D+ F+ +G  K  +      R GG V LVG+    + + +  A ++EV +  VFRY N +   L+ + SGK+D+KPLIT  + F+  +  +AFE +A+G
Sbjct:  187 AGGCSKVLISDFSAPKLKIAAQYAG--IVPVNIGERSLVDAVAAATDKWGA--DIVFEASGSPKAFADLFDVVRPGGAVVLVGLPVEPVALNVPAAISKEVRIETVFRYANIFDRALQLIASGKVDLKPLITGTYDFA--DSIKAFERAAQG 332          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_VIBCM (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 46/162 (28.40%), Postives = 82/162 (50.62%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL+D+ +E+      M  G DV  + +G     S  L     GG++ L+G+    M +       + + + G++  +   TW      ++SG +D+ P+ITH   F   + ++ F+   R G + KV+ +
Sbjct:  189 GARHVVITDVNEYRLDLARKMGVTRAVNVAEQNLEDVMKEL-----GMTEGFDVGLEMSGVPSAFSAMLKTMNHGGRIALLGIPPSSMAIDWNQVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDISPIITHH--FKVDDFQKGFDI-MRSGASGKVILD 341          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_VIBCH (L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=tdh PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 46/162 (28.40%), Postives = 82/162 (50.62%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL+D+ +E+      M  G DV  + +G     S  L     GG++ L+G+    M +       + + + G++  +   TW      ++SG +D+ P+ITH   F   + ++ F+   R G + KV+ +
Sbjct:  189 GARHVVITDVNEYRLDLARKMGVTRAVNVAEQNLEDVMKEL-----GMTEGFDVGLEMSGVPSAFSAMLKTMNHGGRIALLGIPPSSMAIDWNQVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDISPIITHH--FKVDDFQKGFDI-MRSGASGKVILD 341          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_VIBC3 (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 46/162 (28.40%), Postives = 82/162 (50.62%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL+D+ +E+      M  G DV  + +G     S  L     GG++ L+G+    M +       + + + G++  +   TW      ++SG +D+ P+ITH   F   + ++ F+   R G + KV+ +
Sbjct:  189 GARHVVITDVNEYRLDLARKMGVTRAVNVAEQNLEDVMKEL-----GMTEGFDVGLEMSGVPSAFSAMLKTMNHGGRIALLGIPPSSMAIDWNQVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDISPIITHH--FKVDDFQKGFDI-MRSGASGKVILD 341          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_SALEP3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella enteriti... [more]
TDH_SALDC3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella dublin (... [more]
TDH_SALCH3.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella cholerae... [more]
TDH_SALA43.058e-1229.01L-threonine 3-dehydrogenase OS=Salmonella agona (s... [more]
TDH_PYRKO3.058e-1232.32Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_ERWCT3.058e-1229.63L-threonine 3-dehydrogenase OS=Erwinia carotovora ... [more]
XYLD_RHILO3.993e-1230.26Putative D-xylulose reductase OS=Rhizobium loti GN... [more]
TDH_VIBCM3.993e-1228.40L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]
TDH_VIBCH3.993e-1228.40L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=... [more]
TDH_VIBC33.993e-1228.40L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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