CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_AGRRK (L-threonine 3-dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 45/160 (28.12%), Postives = 78/160 (48.75%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            GA ++VI D++  RL++A KLG D++V  S  NL D+ + +      M  G DV  + +G        +     GGK+ ++G+      +       + +++ G++  +   TW   + F++ G +DV P+ITHR G    +  E FE    G +   VM
Sbjct:  191 GARKVVITDINPNRLALAHKLGIDHVVDASKENLADVMKSI-----GMTEGFDVGLEMSGAAPAFRDMIDKMNNGGKIAILGIAPAGFEIDWNKVIFKMLNLKGIYGREMFETWYKMIAFVQGG-LDVSPVITHRIGID--DFREGFEAMRSGNSGKVVM 342          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHESM (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 42/153 (27.45%), Postives = 78/153 (50.98%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV++YRL +A+K+GA   V V+  +L+D+ +E+      M  G DV  + +G        L     GGK+ ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH +     + ++ F+    G
Sbjct:  187 GARHVVITDVNEYRLELARKMGATRAVNVAQESLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKIAMLGIPGGEMAIDWSKVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDISPIITHHYKID--DFQKGFDAMGSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHESA (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 42/153 (27.45%), Postives = 78/153 (50.98%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV++YRL +A+K+GA   V V+  +L+D+ +E+      M  G DV  + +G        L     GGK+ ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH +     + ++ F+    G
Sbjct:  187 GARHVVITDVNEYRLELARKMGATRAVNVAQESLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKIAMLGIPGGEMAIDWSKVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDISPIITHHYKID--DFQKGFDAMGSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_RHIL3 (L-threonine 3-dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 43/160 (26.88%), Postives = 79/160 (49.38%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            GA ++VI D++ +RL +A+KLG D++V  S  NL D+ + +      M  G DV  + +G        +     GGK+ ++G+      +       + +++ G++  +   TW   + F++ G +D+ P+ITHR G    +  + FE    G +   VM
Sbjct:  191 GARKVVITDINPHRLELARKLGIDHVVDASKENLADVMKAI-----GMTEGFDVGLEMSGAAPAFRDMIDKMNNGGKIAILGIAPAGFEIDWNKVIFKMLNLKGIYGREMFETWYKMIAFVQGG-LDLAPIITHRIGID--DFRDGFEAMRSGNSGKVVM 342          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_PSEHT (L-threonine 3-dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 43/157 (27.39%), Postives = 79/157 (50.32%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI DV++YRL +A+K+GA   V V+   L+D+ +E+      M  G D+  + +G     ++ L+    GGKV ++G+   +M V       + + + G++  +   TW      ++SG +D+ P+ITH++     +       S + G  I
Sbjct:  187 GARHVVISDVNEYRLELARKMGATRAVNVANEKLEDVIKEL-----GMTEGFDIGLEMSGVPSAFNSMLNNMNHGGKVAMLGIPPSDMAVDWNQVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDLNPIITHQYSIDDFQAGFDMMISGQSGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_IDILO (L-threonine 3-dehydrogenase OS=Idiomarina loihiensis GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 47/162 (29.01%), Postives = 78/162 (48.15%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS   L D+  E+      M  G DV  + +G     S  L     GGK+ ++G+    + +       + + + G++  +   TW      L+SG +D+ P++TH       + E+ FET   G +  KV+ N
Sbjct:  187 GARHVVITDVNEYRLDLARKMGVTRAVDVSKEKLSDVMTEL-----GMKEGFDVGLEMSGVPSAFSQMLETMNHGGKIAMLGIPPENIAIDWNQVIFKGLVIKGIYGREMFETWYKMASLLQSG-LDISPILTHEMPID--DFEKGFETMISGQSG-KVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_CITK8 (L-threonine 3-dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 47/162 (29.01%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G  + V V+  NL D+   +      M  G DV  + +G        L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  E ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELARKMGIIHTVNVAKENLTDVMANL-----GMTEGFDVGLEMSGAPPAFRAMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDEFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHELP (L-threonine 3-dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 44/162 (27.16%), Postives = 84/162 (51.85%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +AKK+GA   V V+   L+D+ +++      M  G DV  + +G      + L     GGK+ ++G+   +M +  +    + + + G++  +   TW      ++SG +D+ P+ITH +     + +  F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLELAKKMGATRAVNVAKEKLEDVMQDL-----GMTEGFDVGLEMSGVPAAFHSMLDTMNHGGKIAMLGIPGGDMAIDWSKVIFKGLIIKGIYGREMFETWYKMASLIQSG-LDISPIITHHYNVD--DFQAGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_COLP3 (L-threonine 3-dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 43/162 (26.54%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI D+++YRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGK+ ++G+   +M +  +    + + + G++  +   TW      ++SG +D+ P+ITH +     + ++ F+   R G + KV+ +
Sbjct:  187 GARHVVITDINEYRLDLARKMGATRAVDVSKESLKDVMTDL-----GMTEGFDVGMEMSGVPMAFTSMLESMNNGGKIAMLGIPGSDMAIDWSQVIFKGLTIKGIYGREMFETWYKMASLIQSG-LDLTPIITHHYNID--DFQQGFD-MMRSGQSGKVILD 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_VIBF1 (L-threonine 3-dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKV-STNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRF 405
            GA  +VI DV++YRL +AKK+G    V V +  L+D+  E+      M  G DV  + +G     ++ L+    GGK+ L+G+   +MTV       + + + G++  +   TW      ++SG +D+ P+ITH +
Sbjct:  189 GARHVVITDVNEYRLDLAKKMGVTRAVNVMNEKLEDVMSEL-----GMTEGFDVGLEMSGNPSAFNSMLTNMNHGGKISLLGIPPSDMTVDWNQVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDLTPIITHHY 318          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_AGRRK8.897e-1228.13L-threonine 3-dehydrogenase OS=Agrobacterium radio... [more]
TDH_SHESM1.162e-1127.45L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHESA1.162e-1127.45L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_RHIL31.162e-1126.88L-threonine 3-dehydrogenase OS=Rhizobium leguminos... [more]
TDH_PSEHT1.162e-1127.39L-threonine 3-dehydrogenase OS=Pseudoalteromonas h... [more]
TDH_IDILO1.162e-1129.01L-threonine 3-dehydrogenase OS=Idiomarina loihiens... [more]
TDH_CITK81.162e-1129.01L-threonine 3-dehydrogenase OS=Citrobacter koseri ... [more]
TDH_SHELP1.518e-1127.16L-threonine 3-dehydrogenase OS=Shewanella loihica ... [more]
TDH_COLP31.518e-1126.54L-threonine 3-dehydrogenase OS=Colwellia psychrery... [more]
TDH_VIBF11.982e-1130.88L-threonine 3-dehydrogenase OS=Vibrio fischeri (st... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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