CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_COXBU (L-threonine 3-dehydrogenase OS=Coxiella burnetii GN=tdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 46/161 (28.57%), Postives = 80/161 (49.69%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVF--RYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV+DYRL++A+K+G      V++    + E ++ +   M  G DV  + +G  +   + L+    GGK+  +G+      +       + + + G++  R   TW      L SG +D+ P+ITH   F  K+ ++AF+    G T  KV+ N
Sbjct:  187 GARHVVITDVNDYRLALAEKVGV--TAAVNSTKTPLTETMKNL--GMTEGFDVGLEMSGNAEAFRSMLTVMNNGGKIAFLGIPPEPFAIDWNQVVFKSLLIKGIYGRRMFETWYKMTNLLLSG-LDISPIITHE--FPMKDFQQAFDVMLSGKTG-KVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_COXBR (L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 46/161 (28.57%), Postives = 80/161 (49.69%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVF--RYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV+DYRL++A+K+G      V++    + E ++ +   M  G DV  + +G  +   + L+    GGK+  +G+      +       + + + G++  R   TW      L SG +D+ P+ITH   F  K+ ++AF+    G T  KV+ N
Sbjct:  187 GARHVVITDVNDYRLALAEKVGV--TAAVNSTKTPLTETMKNL--GMTEGFDVGLEMSGNAEAFRSMLTVMNNGGKIAFLGIPPEPFAIDWNQVVFKSLLIKGIYGRRMFETWYKMTNLLLSG-LDISPIITHE--FPMKDFQQAFDVMLSGKTG-KVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_COXBN (L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 46/161 (28.57%), Postives = 80/161 (49.69%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVF--RYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV+DYRL++A+K+G      V++    + E ++ +   M  G DV  + +G  +   + L+    GGK+  +G+      +       + + + G++  R   TW      L SG +D+ P+ITH   F  K+ ++AF+    G T  KV+ N
Sbjct:  187 GARHVVITDVNDYRLALAEKVGV--TAAVNSTKTPLTETMKNL--GMTEGFDVGLEMSGNAEAFRSMLTVMNNGGKIAFLGIPPEPFAIDWNQVVFKSLLIKGIYGRRMFETWYKMTNLLLSG-LDISPIITHE--FPMKDFQQAFDVMLSGKTG-KVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_COXB2 (L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 46/161 (28.57%), Postives = 80/161 (49.69%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVF--RYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV+DYRL++A+K+G      V++    + E ++ +   M  G DV  + +G  +   + L+    GGK+  +G+      +       + + + G++  R   TW      L SG +D+ P+ITH   F  K+ ++AF+    G T  KV+ N
Sbjct:  187 GARHVVITDVNDYRLALAEKVGV--TAAVNSTKTPLTETMKNL--GMTEGFDVGLEMSGNAEAFRSMLTVMNNGGKIAFLGIPPEPFAIDWNQVVFKSLLIKGIYGRRMFETWYKMTNLLLSG-LDISPIITHE--FPMKDFQQAFDVMLSGKTG-KVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: IDND_ECOLI (L-idonate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=idnD PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 49/156 (31.41%), Postives = 80/156 (51.28%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKV 474
            GA  IV  DV    LS+ K++GAD +V    N Q+   +  K +K      DVSF+ +G   +++T L  TRA G +  VGMG      P+     +E+ + G FR+ + +   + +L +G I+  PL++  + F+  ++EEA   +     A KV
Sbjct:  193 GAAEIVCADVSPRSLSLGKEMGADVLV----NPQNDDMDHWKAEKGY---FDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFT--DLEEALRFAGDKTQAAKV 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_PSEA6 (L-threonine 3-dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=tdh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 45/162 (27.78%), Postives = 82/162 (50.62%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+GA   V V+  +L+D+  ++      M  G DV  + +G        L     GGKV ++G+   ++ V       + + + G++  +   TW      ++ G +++ P+ITH+F     E ++ F+T   G +  KV+ N
Sbjct:  187 GARHVVITDVNEYRLDLARKMGASRAVNVAKESLKDVMNDL-----GMSEGFDVGLEMSGVPAAFRDMLDKMNHGGKVAMLGIPSGDVAVDWNKVIFKGLVIKGIYGREMFETWYKMASLIQGG-LNLAPIITHQFNID--EFQQGFDTMGSGQSG-KVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO_SCHPO (Putative sorbitol dehydrogenase OS=Schizosaccharomyces pombe GN=tms1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVST----NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKN-TWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            A+GA  IV VD    R+  A+K +GA     ++     +L D A+  ++         D + D  G    + TA+ A + GG     G G   +  P+      E++V+G FRY +  +   L  + +G +DVKPLITHRF F  K+  +A+ET A G
Sbjct:  191 AYGAIDIVAVDASPSRVEFAQKYVGAKPFTPIAAKENESLPDYAQRYKQAIIEKYGEFDFAVDATGVGICIHTAVLALKRGGTFVQAGNGKPVIDFPINHIINYEINVLGSFRYAHGCYKQSLFLVSNGLVDVKPLITHRFAF--KDALKAYETVASG 346          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_VIBFM (L-threonine 3-dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=tdh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 46/162 (28.40%), Postives = 84/162 (51.85%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKV-STNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +AKK+G    V V +  L+D+  ++      M  G DV  + +G     ++ L+    GGK+ L+G+   +MTV       + + + G++  +   TW      ++SG +D+ P+ITH +     + ++ F+   R G + KV+ +
Sbjct:  189 GARHVVITDVNEYRLDLAKKMGVTRAVNVMNEKLEDVMSDL-----GMTEGFDVGLEMSGNPSAFNSMLTNMNHGGKISLLGIPPSDMTVDWNQVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDLTPIITHHYKID--DFQKGFD-MMRSGMSGKVILD 341          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_DEIDV (L-threonine 3-dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=tdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 39/152 (25.66%), Postives = 76/152 (50.00%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI D++DYRL +A+K+G    V V+   ++    V + +  M  G DV  + +G     +  +     GGK+ L+G+   ++ +       + + + G++  +   TW      ++SG +D++P+ITH FG    + ++ F+    G
Sbjct:  187 GARNVVITDINDYRLDLARKMGVTRAVNVT---KEDLWSVARNELGMTEGFDVGLEMSGSGPAFAQMVDVMNNGGKIALLGIPSGDVRIDWNAVIFKMLTIKGIYGREMFETWYKMAALIQSG-LDLRPIITHHFGID--DFQQGFDAMLSG 332          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SACEN (L-threonine 3-dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV ++RL +A+++G D  V V+     IA+   K+   M  G DV+ + +G    +   +     GG++ ++G+      +  +    + + V G++  +   TW      L+SG +D+ P+ITHRF  ++    EAFET AR G   KV+ +
Sbjct:  187 GARNVVITDVSEHRLELARRVGVDLAVNVAET--GIADAQAKL--GMSEGFDVAMEVSGQPSALRETIENMAHGGRIAMLGLPAERFQIDWSAVVLKMLTVKGIYGREMFETWYSMSVLLQSG-LDLSPVITHRFPCTRH--VEAFET-ARAGRCGKVILD 339          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_COXBU1.982e-1128.57L-threonine 3-dehydrogenase OS=Coxiella burnetii G... [more]
TDH_COXBR1.982e-1128.57L-threonine 3-dehydrogenase OS=Coxiella burnetii (... [more]
TDH_COXBN1.982e-1128.57L-threonine 3-dehydrogenase OS=Coxiella burnetii (... [more]
TDH_COXB21.982e-1128.57L-threonine 3-dehydrogenase OS=Coxiella burnetii (... [more]
IDND_ECOLI1.982e-1131.41L-idonate 5-dehydrogenase OS=Escherichia coli (str... [more]
TDH_PSEA62.588e-1127.78L-threonine 3-dehydrogenase OS=Pseudoalteromonas a... [more]
DHSO_SCHPO2.588e-1132.28Putative sorbitol dehydrogenase OS=Schizosaccharom... [more]
TDH_VIBFM3.381e-1128.40L-threonine 3-dehydrogenase OS=Vibrio fischeri (st... [more]
TDH_DEIDV4.415e-1125.66L-threonine 3-dehydrogenase OS=Deinococcus deserti... [more]
TDH_SACEN5.767e-1129.81L-threonine 3-dehydrogenase OS=Saccharopolyspora e... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
back to top