CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:958..1617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_RHISN (L-threonine 3-dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 43/160 (26.88%), Postives = 76/160 (47.50%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            GA ++VI D++  RL +A+KLG D++V  S  NL D+   +      M  G DV  + +G        +     GGK+ ++G+      +       + +++ G++  +   TW   + F++ G +D+ P+ITHR G       + FE    G +   VM
Sbjct:  191 GARKVVITDINPVRLDLARKLGIDHVVDASKENLADVMRSI-----GMTEGFDVGLEMSGAAPAFRDMIDKMNNGGKIAILGIAPAGFEIDWNKVIFKMLNLKGIYGREMFETWYKMIAFVQGG-LDLAPVITHRIGID--AFRDGFEAMRSGNSGKVVM 342          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_RHIEC (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 42/160 (26.25%), Postives = 78/160 (48.75%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            GA ++VI D++ +RL +A+KLG D++V  S  NL D+ + +      M  G DV  + +G        +     GGK+ ++G+      +       + +++ G++  +   TW   + F++ G +D+ P+ITHR      +  + FE    G +   VM
Sbjct:  191 GARKVVITDINPHRLDLARKLGIDHVVDASKENLADVMKAI-----GMTEGFDVGLEMSGAAPAFRDMIDKMNNGGKIAILGIAPAGFEIDWNKVIFKMLNLKGIYGREMFETWYKMIAFVQGG-LDLSPIITHRIKID--DFRDGFEAMRSGNSGKVVM 342          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_RHIE6 (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 42/160 (26.25%), Postives = 78/160 (48.75%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            GA ++VI D++ +RL +A+KLG D++V  S  NL D+ + +      M  G DV  + +G        +     GGK+ ++G+      +       + +++ G++  +   TW   + F++ G +D+ P+ITHR      +  + FE    G +   VM
Sbjct:  191 GARKVVITDINPHRLDLARKLGIDHVVDASKENLADVMKAI-----GMTEGFDVGLEMSGAAPAFRDMIDKMNNGGKIAILGIAPAGFEIDWNKVIFKMLNLKGIYGREMFETWYKMIAFVQGG-LDLSPIITHRIKID--DFRDGFEAMRSGNSGKVVM 342          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: ADH_RALEU (Alcohol dehydrogenase OS=Ralstonia eutropha GN=adh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 41/143 (28.67%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLC----------LEFLRSGKIDVKPLITHRF 405
            GA  I+ +D +D+RL +A+K+GAD ++       D+ +EV K+    G G+D S +  G   T   +L   + GG +  +G+   ++T+PL+  AA      G+  +K    LC          +  + SG++D+  L+TH++
Sbjct:  207 GATTIIAIDGNDHRLEIARKMGADVVLNFRNC--DVVDEVMKLTG--GRGVDASIEALGTQATFEQSLRVLKPGGTLSSLGVYSSDLTIPLSAFAA------GLGDHKINTALCPGGKERMRRLINVIESGRVDLGALVTHQY 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_VIBPA (L-threonine 3-dehydrogenase OS=Vibrio parahaemolyticus GN=tdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 44/162 (27.16%), Postives = 83/162 (51.23%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+   L+D+  E+      M  G DV  + +G     ++ L+    GG++ L+G+   +M +       + + + G++  +   TW      ++SG +D+ P+ITH +     + +E F+   R G + KV+ +
Sbjct:  189 GARHVVITDVNEYRLELARKMGVTRAVNVAEEKLEDVMAEL-----GMTEGFDVGLEMSGNPAAFNSMLTTMNHGGRIALLGIPPSDMGIDWNQVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDLSPIITHHYKID--DFQEGFDV-MRSGMSGKVILD 341          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_AERS4 (L-threonine 3-dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 42/154 (27.27%), Postives = 74/154 (48.05%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV++YRL +A+K+GA   V VS       E++  +  A+G   G DV  + +G        +     GGK+ ++G+    M +       + + + G++  +   TW      ++SG +D+ P+ITH F     + ++ FE    G
Sbjct:  187 GARHVVITDVNEYRLELARKMGATRAVNVS------KEKLADVMSALGMTEGFDVGLEMSGVPSAFQDMIDKMNHGGKIAMLGIPPSTMAIDWNKVIFKGLFIKGIYGREMFETWYKMASLIQSG-LDLTPIITHHFHID--DFQQGFEAMGSG 331          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_RHISN7.531e-1126.88L-threonine 3-dehydrogenase OS=Rhizobium sp. (stra... [more]
TDH_RHIEC7.531e-1126.25L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]
TDH_RHIE67.531e-1126.25L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]
ADH_RALEU7.531e-1128.67Alcohol dehydrogenase OS=Ralstonia eutropha GN=adh... [more]
TDH_VIBPA9.836e-1127.16L-threonine 3-dehydrogenase OS=Vibrio parahaemolyt... [more]
TDH_AERS49.836e-1127.27L-threonine 3-dehydrogenase OS=Aeromonas salmonici... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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