CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:958..1617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURCM (L-threonine 3-dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L A   GGK+ L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSMLEAMNHGGKIALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEKGFAAMLSGESGKVI 337
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURXL (L-threonine 3-dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/153 (31.37%), Postives = 80/153 (52.29%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV+DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     +  L A   GGK+ L+G+   +  +  T    + +++ G++  +   TW   +  L+SG +D+ P++TH   F   +  EAF T   G
Sbjct:  187 GARNVVITDVNDYRLELARKMGATRAVNVSRESLRDVMADLH-----MAEGFDVGLEMSGVPSAFTGMLEAMNHGGKIALLGIPPAQTAIDWTQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPILTHH--FKVDDYREAFATMLSG 331
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURS3 (L-threonine 3-dehydrogenase OS=Burkholderia sp. (strain 383) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V V+  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVARESLRDVMSDLH-----MTEGFDVGLEMSGVPSAFTSMLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEKGFAAMLSGESGKVI 337
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURPS (L-threonine 3-dehydrogenase OS=Burkholderia pseudomallei GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAVDDYEKGFAAMLSGESGKVI 337
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURP6 (L-threonine 3-dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAVDDYEKGFAAMLSGESGKVI 337
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURP1 (L-threonine 3-dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAVDDYEKGFAAMLSGESGKVI 337
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURP0 (L-threonine 3-dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAVDDYEKGFAAMLSGESGKVI 337
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURMS (L-threonine 3-dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAVDDYEKGFAAMLSGESGKVI 337
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURMA (L-threonine 3-dehydrogenase OS=Burkholderia mallei GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAVDDYEKGFAAMLSGESGKVI 337
[Close]
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURM9 (L-threonine 3-dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAVDDYEKGFAAMLSGESGKVI 337
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_BURCM5.572e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia ambifa... [more]
TDH_BURXL7.278e-1431.37L-threonine 3-dehydrogenase OS=Burkholderia xenovo... [more]
TDH_BURS37.278e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia sp. (s... [more]
TDH_BURPS7.278e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia pseudo... [more]
TDH_BURP67.278e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia pseudo... [more]
TDH_BURP17.278e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia pseudo... [more]
TDH_BURP07.278e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia pseudo... [more]
TDH_BURMS7.278e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia mallei... [more]
TDH_BURMA7.278e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia mallei... [more]
TDH_BURM97.278e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia mallei... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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