CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURM7 (L-threonine 3-dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAVDDYEKGFAAMLSGESGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURM1 (L-threonine 3-dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V V+  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVARESLRDVMADLR-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEKGFAAMLSGESGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURCJ (L-threonine 3-dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V V+  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVARESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEQGFAAMLSGESGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURCH (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V V+  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVARESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEQGFAAMLSGESGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURCC (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V V+  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVARESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEQGFAAMLSGESGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURCA (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+K+GA   V V+  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLELARKMGATRAVNVARESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEQGFAAMLSGESGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHEPA (L-threonine 3-dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=tdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.241e-13
Identity = 48/162 (29.63%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+GA   V V+  NL+D+ +E+      M  G DV  + +G      + L     GGK+ ++G+   +M +  +    + + + G++  +   TW      ++SG +D+ P+ITH   +S  E ++ F+ + R G + KV+ N
Sbjct:  187 GARHVVITDVNEYRLELAEKMGATRAVNVAKENLEDVMQEL-----GMTEGFDVGLEMSGVPSAFHSMLDTMNHGGKIAMLGIPGGDMAIDWSKVIFKGLIIKGIYGREMFETWYKMASLIQSG-LDISPIITHH--YSIDEFQQGFD-AMRSGQSGKVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHEHH (L-threonine 3-dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=tdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.241e-13
Identity = 49/162 (30.25%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+GA   V V+   L+D+ +E+      M  G DV  + +G      + L     GGK+ ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH   FS  E ++ F+ + R G + KV+ N
Sbjct:  187 GARHVVITDVNEYRLELAQKMGATRAVNVAKEKLEDVMQEL-----GMTEGFDVGLEMSGVPSAFHSMLDTMNHGGKIAMLGIPGGEMAIDWSKVIFKGLIIKGIYGREMFETWYKMASLIQSG-LDISPIITHH--FSIDEFQQGFD-AMRSGQSGKVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_BURTA (L-threonine 3-dehydrogenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=tdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 47/157 (29.94%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 468
            GA  +VI D++DYRL +A+++GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  187 GARNVVITDINDYRLDLARRMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAVDDYEKGFAAMLSGESGKVI 337          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: YDJL_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein ydjL OS=Escherichia coli (strain K12) GN=ydjL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.118e-13
Identity = 55/161 (34.16%), Postives = 81/161 (50.31%), Query Frame = 1
Query:    7 GAPRIVIVDVDD---YRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNT-WPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            GA  IV+V + +    R  VAK+LGA  +V  ST  +D+    ++I      G+ +  +C+G N  +  A+   R  G+V  VGMG + +   +    A    ++G   Y +T W   +  L SG I VKP+ITHR G SQ    E F+      TAIKV+
Sbjct:  198 GAVNIVVVGLQEDVAVRFPVAKELGATAVVNGST--EDVVARCQQICGKDNLGLVI--ECSGANIALKQAIEMLRPNGEVVRVGMGFKPLDFSINDITAWNKSIIGHMAYDSTSWRNAIRLLASGAIKVKPMITHRIGLSQ--WREGFDAMV-DKTAIKVI 351          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_BURM77.278e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia mallei... [more]
TDH_BURM19.505e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia multiv... [more]
TDH_BURCJ9.505e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia cepaci... [more]
TDH_BURCH9.505e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
TDH_BURCC9.505e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
TDH_BURCA9.505e-1430.57L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
TDH_SHEPA1.241e-1329.63L-threonine 3-dehydrogenase OS=Shewanella pealeana... [more]
TDH_SHEHH1.241e-1330.25L-threonine 3-dehydrogenase OS=Shewanella halifaxe... [more]
TDH_BURTA1.621e-1329.94L-threonine 3-dehydrogenase OS=Burkholderia thaila... [more]
YDJL_ECOLI2.118e-1334.16Uncharacterized zinc-type alcohol dehydrogenase-li... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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