CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHEB8 (L-threonine 3-dehydrogenase OS=Shewanella baltica (strain OS185) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 46/153 (30.07%), Postives = 78/153 (50.98%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV++YRL +A+K+GA   V VS  NL+D+ +E+      M  G DV  + +G        L     GGKV ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH F     + ++ F+    G
Sbjct:  187 GARHVVITDVNEYRLELARKMGATRAVNVSKENLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKVAMLGIPSGEMAIDWSKVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDISPIITHHFKID--DFQQGFDAMGSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SERP5 (L-threonine 3-dehydrogenase OS=Serratia proteamaculans (strain 568) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 49/162 (30.25%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      T L+A   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF   Q   ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLDLARKMGVTRAVNVSKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTLLNAMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHRFTIDQ--FQQGFD-AMRSGQSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_ALTMD (L-threonine 3-dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +V+ D++ YRL +AKK+GA   V VS  NLQD+ +E+      M  G DV  + +G        L+    GGK+ ++G+  +++ V       + + + G++  +   TW      L+SG +D+ P+ITH   FS  + ++ F+T   G
Sbjct:  187 GARHVVVTDINPYRLELAKKMGATRTVDVSKENLQDVMDEL-----GMSEGFDVGLEMSGVPVAFRDMLNKMNHGGKIAMLGIPPQDVAVDWNQVIFKGLVIKGIYGREMFETWYKMASLLQSG-LDLSPIITHT--FSIDDFQKGFDTMGSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_PHOLL (L-threonine 3-dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 51/162 (31.48%), Postives = 84/162 (51.85%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      T L+    GG+V L+G+   +M +       + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+   R G + KV+ N
Sbjct:  187 GARHVVITDVNEYRLELARKMGVTRAVNVSQENLTDVMAEL-----GMTEGFDVGLEMSGAPAAFRTLLNTMNHGGRVALLGIPPSDMAIDWNQVIFKGLFIKGIYGREMFETWYKMATLIQSG-LDLTPIITHR--FSIDDFQKGFDI-MRSGQSGKVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_KLEP7 (L-threonine 3-dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G      + L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHRFG    + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGVTRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRSMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHRFGID--DFQKGFD-AMRSGQSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_KLEP3 (L-threonine 3-dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G      + L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHRFG    + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGVTRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRSMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHRFGID--DFQKGFD-AMRSGQSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_FRAP2 (L-threonine 3-dehydrogenase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 48/156 (30.77%), Postives = 81/156 (51.92%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA RIVI D++ YRL +A+  GA   V VS   N Q +  ++ K+   +G   G DV  + +G N  +S  L     GGK+ L+G+   +++V       + + + G++  +   TW L    L++G +D++P+ITHR      + ++ FE    G
Sbjct:  188 GARRIVITDINKYRLQMARDFGATVAVNVSEFQNQQQLTAQMRKVMSEIGMTEGFDVGLEMSGINSAISMMLDVMNHGGKLSLLGISAGDISVDWGAILFKGLTLKGIYGREMFETWYLMTSMLQAG-MDMEPIITHRLHID--DYQKGFEIMKSG 340          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_ESCF3 (L-threonine 3-dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 48/162 (29.63%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL+D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAVNVAKENLEDVMAEL-----GMTEGFDVGLEMSGAPAAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_YERE8 (L-threonine 3-dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G        L++   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHR  FS  E ++ F+ + R G + KV+ N
Sbjct:  187 GARHVVITDVNEYRLDLARKMGVTRAVNVNKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRALLNSMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHR--FSIDEFQQGFD-AMRSGKSGKVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHISS (L-threonine 3-dehydrogenase OS=Shigella sonnei (strain Ss046) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G D+  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMAEGFDIGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_SHEB82.766e-1330.07L-threonine 3-dehydrogenase OS=Shewanella baltica ... [more]
TDH_SERP52.766e-1330.25L-threonine 3-dehydrogenase OS=Serratia proteamacu... [more]
TDH_ALTMD2.766e-1330.72L-threonine 3-dehydrogenase OS=Alteromonas macleod... [more]
TDH_PHOLL4.717e-1331.48L-threonine 3-dehydrogenase OS=Photorhabdus lumine... [more]
TDH_KLEP74.717e-1329.01L-threonine 3-dehydrogenase OS=Klebsiella pneumoni... [more]
TDH_KLEP34.717e-1329.01L-threonine 3-dehydrogenase OS=Klebsiella pneumoni... [more]
TDH_FRAP26.161e-1330.77L-threonine 3-dehydrogenase OS=Francisella philomi... [more]
TDH_ESCF36.161e-1329.63L-threonine 3-dehydrogenase OS=Escherichia ferguso... [more]
TDH_YERE88.047e-1329.63L-threonine 3-dehydrogenase OS=Yersinia enterocoli... [more]
TDH_SHISS8.047e-1329.01L-threonine 3-dehydrogenase OS=Shigella sonnei (st... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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