CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_PROMH (L-threonine 3-dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 50/162 (30.86%), Postives = 84/162 (51.85%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +AKK+G    V VS  NL D+ +E+      M  G DV  + +G      T LS    GG++ L+G+   +M +       + + + G++  +   TW      ++SG +D+ P+ITH+F     E ++ F+   R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLDLAKKMGVTRAVNVSKENLTDVMKEL-----GMTEGFDVGLEMSGAPPAFRTMLSTMNHGGRIALLGIPPSDMAIDWGQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHQFPID--EFQKGFDI-MRSGQSGKVILD 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_ECOLU (L-threonine 3-dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGVTRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: XYLD_MORMO (D-xylulose reductase OS=Morganella morganii PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSA 450
            A G   ++I DV D +L VA+K    + V  S + Q +A++V ++    G G++V F+C+G    +++       GG   LVGM      + +  A A+EV    + RY N +P  +  L SGK++V PL++  + F  K+  EA+E +A
Sbjct:  188 AGGCSDVIICDVFDEKLKVAEKYQGLHAVN-SKDQQALADKVRELTG--GEGVNVLFECSGAKPVIASISDHIAPGGTAVLVGMPIDPAPLDIVAAQAKEVTFKTILRYANMYPRTIRLLSSGKLNVAPLLSATYKF--KDSVEAYERAA 332          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHIFL (L-threonine 3-dehydrogenase OS=Shigella flexneri GN=tdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHIF8 (L-threonine 3-dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHIBS (L-threonine 3-dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHIB3 (L-threonine 3-dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHEPC (L-threonine 3-dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 45/153 (29.41%), Postives = 78/153 (50.98%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV++YRL +A+K+GA   V VS  NL+D+ +E+      M  G DV  + +G        L     GGKV ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH +     + ++ F+    G
Sbjct:  187 GARHVVITDVNEYRLELARKMGATRAVNVSKENLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKVAMLGIPGGEMAIDWSKVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDISPIITHHYKID--DFQKGFDAMGSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_ENTS8 (L-threonine 3-dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRLS+A+K+G    V V+  +LQD+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLSLARKMGVTRAVNVANESLQDVMNEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWNKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHRFTID--DFQKGFD-AMRSGQSGKVILS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_ECOUT (L-threonine 3-dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T    + + + G++  +   TW      ++SG +D+ P+ITHR  FS  + ++ F+ + R G + KV+ +
Sbjct:  187 GARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMTEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLSPIITHR--FSIDDFQKGFD-AMRSGQSGKVILS 339          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_PROMH8.047e-1330.86L-threonine 3-dehydrogenase OS=Proteus mirabilis (... [more]
TDH_ECOLU8.047e-1329.63L-threonine 3-dehydrogenase OS=Escherichia coli O1... [more]
XYLD_MORMO1.051e-1232.00D-xylulose reductase OS=Morganella morganii PE=1 S... [more]
TDH_SHIFL1.051e-1229.63L-threonine 3-dehydrogenase OS=Shigella flexneri G... [more]
TDH_SHIF81.051e-1229.63L-threonine 3-dehydrogenase OS=Shigella flexneri s... [more]
TDH_SHIBS1.051e-1229.63L-threonine 3-dehydrogenase OS=Shigella boydii ser... [more]
TDH_SHIB31.051e-1229.63L-threonine 3-dehydrogenase OS=Shigella boydii ser... [more]
TDH_SHEPC1.051e-1229.41L-threonine 3-dehydrogenase OS=Shewanella putrefac... [more]
TDH_ENTS81.051e-1229.01L-threonine 3-dehydrogenase OS=Enterobacter sakaza... [more]
TDH_ECOUT1.051e-1229.63L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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