CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:958..1617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_FRATT (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 46/156 (29.49%), Postives = 82/156 (52.56%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA RIVI D+++YRL +A+  GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S  L     GGK+ L+G+   +++V       + + + G++  +   TW L    L++G +D+ P+ITHR      E ++ FE    G
Sbjct:  188 GARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAISMMLDVMNHGGKLSLLGISAGDISVDWGAILFKGLTLKGIYGREMFETWYLMTSMLQAG-MDMNPIITHRLHID--EFQKGFEIMKSG 340          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_FRATO (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 46/156 (29.49%), Postives = 82/156 (52.56%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA RIVI D+++YRL +A+  GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S  L     GGK+ L+G+   +++V       + + + G++  +   TW L    L++G +D+ P+ITHR      E ++ FE    G
Sbjct:  188 GARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAISMMLDVMNHGGKLSLLGISAGDISVDWGAILFKGLTLKGIYGREMFETWYLMTSMLQAG-MDMNPIITHRLHID--EFQKGFEIMKSG 340          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_FRATM (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 46/156 (29.49%), Postives = 82/156 (52.56%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA RIVI D+++YRL +A+  GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S  L     GGK+ L+G+   +++V       + + + G++  +   TW L    L++G +D+ P+ITHR      E ++ FE    G
Sbjct:  188 GARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAISMMLDVMNHGGKLSLLGISAGDISVDWGAILFKGLTLKGIYGREMFETWYLMTSMLQAG-MDMNPIITHRLHID--EFQKGFEIMKSG 340          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_FRATH (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 46/156 (29.49%), Postives = 82/156 (52.56%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA RIVI D+++YRL +A+  GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S  L     GGK+ L+G+   +++V       + + + G++  +   TW L    L++G +D+ P+ITHR      E ++ FE    G
Sbjct:  188 GARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAISMMLDVMNHGGKLSLLGISAGDISVDWGAILFKGLTLKGIYGREMFETWYLMTSMLQAG-MDMNPIITHRLHID--EFQKGFEIMKSG 340          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_FRATF (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 46/156 (29.49%), Postives = 82/156 (52.56%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA RIVI D+++YRL +A+  GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S  L     GGK+ L+G+   +++V       + + + G++  +   TW L    L++G +D+ P+ITHR      E ++ FE    G
Sbjct:  188 GARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAISMMLDVMNHGGKLSLLGISAGDISVDWGAILFKGLTLKGIYGREMFETWYLMTSMLQAG-MDMNPIITHRLHID--EFQKGFEIMKSG 340          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_FRAT1 (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 46/156 (29.49%), Postives = 82/156 (52.56%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA RIVI D+++YRL +A+  GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S  L     GGK+ L+G+   +++V       + + + G++  +   TW L    L++G +D+ P+ITHR      E ++ FE    G
Sbjct:  188 GARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAISMMLDVMNHGGKLSLLGISAGDISVDWGAILFKGLTLKGIYGREMFETWYLMTSMLQAG-MDMNPIITHRLHID--EFQKGFEIMKSG 340          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_YERPY (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      + L++   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL-----GMTEGFDVGLEMSGAPPAFRSLLNSMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHRFPID--EFQQGFD-AMRSGKSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_YERPS (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      + L++   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL-----GMTEGFDVGLEMSGAPPAFRSLLNSMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHRFPID--EFQQGFD-AMRSGKSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_YERPP (L-threonine 3-dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      + L++   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVIADVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL-----GMTEGFDVGLEMSGAPPAFRSLLNSMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHRFPID--EFQQGFD-AMRSGKSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_YERPN (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      + L++   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVIADVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL-----GMTEGFDVGLEMSGAPPAFRSLLNSMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHRFPID--EFQQGFD-AMRSGKSGKVVLS 339          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_FRATT1.373e-1229.49L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATO1.373e-1229.49L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATM1.373e-1229.49L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATH1.373e-1229.49L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATF1.373e-1229.49L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRAT11.373e-1229.49L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_YERPY1.793e-1229.01L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPS1.793e-1229.01L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPP1.793e-1229.01L-threonine 3-dehydrogenase OS=Yersinia pestis (st... [more]
TDH_YERPN1.793e-1229.01L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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